Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Field experiment and microcosm soil samples ITS illumina sequencing

ABSTRACT: Field experiment and microcosm soil samples ITS illumina sequencing Raw sequence reads

PROVIDER: PRJNA506286 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8224170_1.fastq.gz	Fastqsanger.gz
	SRR8224170_2.fastq.gz	Fastqsanger.gz
	SRR8224180_1.fastq.gz	Fastqsanger.gz
	SRR8224180_2.fastq.gz	Fastqsanger.gz
	SRR8224190_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 90

Similar Datasets

field experiment and microcosm soil samples 16s illumina sequencing

Project description:field experiment and microcosm soil samples 16s illumina sequencing Raw sequence reads

| PRJNA506120 | ENA

field experiment and microcosm soil samples 16s illumina sequencing

Project description:field experiment and microcosm soil samples 16s illumina sequencing Raw sequence reads

| PRJNA505905 | ENA

Soil samples from field experiment with cover crops

Project description:Metagenome of soil samples from field experiment with cover crops

| PRJNA973547 | ENA

Sugarcane drought experiment under field conditions

Project description:Sugarcane drought experiment under field conditions

| PRJNA515077 | ENA

Sugarcane drought experiment under field conditions

Project description:A field experiment was conducted at the Federal University of Alagoas in Maceio, Brazil. varieties RB86-7515, RB85-5536 and RB92-579 were distributed in a randomized block design with four replicates in two conditions: irrigated (control) and non-irrigated (treatment).

2021-01-14 | GSE125070 | GEO

Gfeller et al 2023 Changins field experiment

Project description:Gfeller et al 2023 Changins field experiment

| PRJEB59165 | ENA

Ctenophore organic matter degradation experiment

Project description:Microcosm experiment on degradation of organic matter from M. Leidyi by marine bacteria

2024-01-14 | PXD043478 | Pride

Anopheles coluzzii strain:Field samples

Project description:Anopheles coluzzii strain:Field Samples

| PRJNA779397 | ENA

Aedes aegypti strain:samples from field population

Project description:Aedes aegypti samples from field population

| PRJNA241150 | ENA

Gene Expression changes induced by exposure to field water samples collected at Greenhorn Mine, CA

Project description:Our research goal is to illustrate the potential of gene expression profiling to discriminate between polluted and non-polluted field sites and predict the presence of a specific contaminant. Using a gene expression analysis, we challenged our custom Daphnia magna cDNA microarray to determine the presence of a specific metal toxicant in blinded field samples collected from two copper mines in California. We compared the gene expression profiles from our field samples to previously established expression profiles for Cu, Cd, and Zn. The expression profiles from the Cu containing field samples clustered with the Cu specific gene expression profiles. Many of the previously discovered copper biomarkers were also differentially expressed in the field samples, suggesting that gene expression analysis is capable of producing robust biomarkers of exposure, which can be validated in field studies. In addition, our study revealed that upstream field samples containing undetectable levels of Cu caused the differential expression of only a few genes, lending support for the concept of a No Observed Transcriptional Effect Level (NOTEL). If confirmed by further studies, the NOTEL may play an important role in discriminating polluted and non-polluted sites in future monitoring efforts. Keywords: ecotoxicogenomic exposure study

2008-06-09 | GSE7667 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data