Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transportation of Highly Diverse Diazotroph Community from the Upstream to Downstream of the Kuroshio

PROVIDER: PRJNA507065 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8247200.fastq.gz	Fastqsanger.gz
	SRR8247210.fastq.gz	Fastqsanger.gz
	SRR8247201.fastq.gz	Fastqsanger.gz
	SRR8247211.fastq.gz	Fastqsanger.gz
	SRR8247202.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

marine metagenome

Project description:Diazotroph Community Structure and Distribution in the Kuroshio Current along the Tokara Strait Raw sequence reads

| PRJNA356489 | ENA

freshwater metagenome

Project description:Bacteria upstream and downstream Raw sequence reads

| PRJNA308377 | ENA

Examples of ribosome profiling in chlamydomonas and mouse

Project description:Ribosome profiling is a technique that permits genome-wide, quantitative analysis of translation and has found broad application in recent years. Here, we describe a modified profiling protocol and software package designed to benefit more broadly the translation community in terms of simplicity and utility. The protocol, applicable to diverse organisms, including organelles, is based largely on previously published profiling methodologies, but employs duplex-specific nuclease as a convenient, bias-free, species-independent way to reduce rRNA contamination. Our protocol typically produces high levels of triplet periodicity, facilitating the detection of coding sequences, including upstream, downstream and overlapping open reading frames (ORFs). This feature also allows the identification of an alternative ribosome conformation evident during termination of protein synthesis. To test the effectiveness of DSN in ribosome profiling, we generated Ribo-Seq libraries from mouse tissue culture cells and from the green alga Chlamydomonas reinhardtii.

2015-10-16 | E-MTAB-2934 | biostudies-arrayexpress

Advanced biofilm analysis in streams receiving organic deicer runoff

Project description:Prolific heterotrophic biofilm growth is a common occurrence in airport receiving streams containing deicer and anti-icer runoff. This study investigated relations of heterotrophic biofilm prevalence and community composition to environmental conditions at stream sites upstream and downstream of Milwaukee Mitchell International Airport in Milwaukee, WI, during two deicing seasons (2009–2010 and 2010–2011). Modern genetic tools (such as microarray) have not previously been applied to biofilm communities in this type of setting. We used microarray results to characterize biofilm community composition as well as the response of the biofilm community to environmental factors (i.e., organic content (using chemical oxygen demand concentration) and temperature).

2019-05-13 | GSE129990 | GEO

Project description:diazotroph community diversities of soil

| PRJNA661676 | ENA

rice paddy metagenome

Project description:Diazotroph community in paddy soil

| PRJNA565596 | ENA

Systematic microRNAome profiling reveals the roles of microRNAs in milk protein metabolism and quality: insights on low-quality forage utilization

Project description:In this study, we investigated the molecular regulatory mechanisms of milk protein production in dairy cows by studying the miRNAomes of five key metabolic tissues involved in protein synthesis and metabolism from dairy cows fed high- and low-quality diets. In total, 340, 338, 337, 330, and 328 miRNAs were expressed in the rumen, duodenum, jejunum, liver, and mammary gland tissues, respectively. Some miRNAs were highly correlated with feed and nitrogen efficiency, with target genes involved in transportation and phosphorylation of amino acid (AA). Additionally, low-quality forage diets (corn stover and rice straw) influenced the expression of feed and nitrogen efficiency-associated miRNAs such as miR-99b in rumen, miR-2336 in duodenum, miR-652 in jejunum, miR-1 in liver, and miR-181a in mammary gland. Ruminal miR-21-3p and liver miR-2285f were predicted to regulate AA transportation by targeting ATP1A2 and SLC7A8, respectively. Furthermore, bovine-specific miRNAs regulated the proliferation and morphology of rumen epithelium, as well as the metabolism of liver lipids and branched-chain AAs, revealing bovine-specific mechanisms. Our results suggest that miRNAs expressed in these five tissues play roles in regulating transportation of AA for downstream milk production, which is an important mechanism that may be associated with low milk protein under lowquality forage feed.

2018-07-21 | GSE117441 | GEO

Project description:Diazotroph community of Narragansett Bay 2017

| PRJNA656687 | ENA

Project description:Bedford Basin diazotroph community - nifH sequencing

| PRJNA930772 | ENA

Project description:Paddy soil bacterial and diazotroph community study

| PRJNA438873 | ENA