Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Dendronephthya gigantea isolate:DGI-Jeju-01

ABSTRACT: Dendronephthya gigantea isolate:DGI-Jeju-01 Genome sequencing and assembly

PROVIDER: PRJNA507923 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR8293698_1.fastq.gz	Fastqsanger.gz
	SRR8293698_2.fastq.gz	Fastqsanger.gz
	SRR8293699_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Dendronephthya gigantea

Project description:Dendronephthya gigantea overview

| PRJNA508233 | ENA

Dendronephthya gigantea

Project description:Dendronephthya gigantea Raw sequence reads

| PRJNA507943 | ENA

Dendronephthya gigantea

Project description:Dendronephthya gigantea Genome sequencing and assembly

| PRJNA507917 | ENA

Dendronephthya mollis

Project description:Dendronephthya mollis overview

| PRJNA192649 | ENA

The Draft Genome of an Octocoral, Dendronephthya gigantea.

Project description:Coral reefs composed of stony corals are threatened by global marine environmental changes. However, soft coral communities of octocorallian species, appear more resilient. The genomes of several cnidarians species have been published, including from stony corals, sea anemones, and hydra. To fill the phylogenetic gap for octocoral species of cnidarians, we sequenced the octocoral, Dendronephthya gigantea, a nonsymbiotic soft coral, commonly known as the carnation coral. The D. gigantea genome size is ∼276 Mb. A high-quality genome assembly was constructed from PacBio long reads (29.85 Gb with 108× coverage) and Illumina short paired-end reads (35.54 Gb with 128× coverage) resulting in the highest N50 value (1.4 Mb) reported thus far among cnidarian genomes. About 12% of the genome is repetitive elements and contained 28,879 predicted protein-coding genes. This gene set is composed of 94% complete BUSCO ortholog benchmark genes, which is the second highest value among the cnidarians, indicating high quality. Based on molecular phylogenetic analysis, octocoral and hexacoral divergence times were estimated at 544 MYA. There is a clear difference in Hox gene composition between these species: unlike hexacorals, the Antp superclass Evx gene was absent in D. gigantea. Here, we present the first genome assembly of a nonsymbiotic octocoral, D. gigantea to aid in the comparative genomic analysis of cnidarians, including stony and soft corals, both symbiotic and nonsymbiotic. The D. gigantea genome may also provide clues to mechanisms of differential coping between the soft and stony corals in response to scenarios of global warming.

| S-EPMC6447388 | biostudies-literature

Crassadoma gigantea isolate:376cg

Project description:Crassadoma gigantea isolate:376cg Genome sequencing

| PRJNA1176125 | ENA

Bipolaris gigantea isolate:BG_F

Project description:Bipolaris gigantea isolate:BG_F Genome sequencing

| PRJNA1095424 | ENA

Sphingomonas sp. JJ-12 isolate:Soil from Jeju

Project description:Sphingomonas sp. JJ-12 isolate:Soil from Jeju Genome sequencing

| PRJNA1142183 | ENA

Plantago lanceolata strain:01 | isolate:01 | breed:01 | cultivar:01

Project description:Plantago lanceolata strain:01 | isolate:01 | breed:01 | cultivar:01 Genome sequencing and assembly