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Next Generation Sequencing Facilitates Quantitative Analysis of root of original buckwheat (Fagopyrum hailuogouense) Transcriptomes

ABSTRACT: Next Generation Sequencing Facilitates Quantitative Analysis of root of original buckwheat (Fagopyrum hailuogouense) Transcriptomes

PROVIDER: PRJNA508529 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR8283720_1.fastq.gz	Fastqsanger.gz
	SRR8283720_2.fastq.gz	Fastqsanger.gz
	SRR8283721_1.fastq.gz	Fastqsanger.gz
	SRR8283721_2.fastq.gz	Fastqsanger.gz
	SRR8283722_1.fastq.gz	Fastqsanger.gz

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Next Generation Sequencing Facilitates Quantitative Analysis of root of original buckwheat (Fagopyrum hailuogouense) Transcriptomes

Project description:We generated 48.39 Gb of high-quality sequencing data (~8.07 Gb per sample). The analysis showed differences of transcriptomes between dormancy and growth stages of origina buckwheat roots. We identified numerous differentially expressed genes that exhibited distinct expression patterns. These genes have known or potential roles in development of origina buckwheat roots. Therefore, we are appealing candidates for further investigation of the gene expression and associated regulatory mechanisms related to asexual reproduction character.

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Project description:We generated 76.61 Gb of high-quality sequencing data (~8.51 Gb per sample) and catalogued the expression profiles of 9,765 annotated Tartary buckwheat genes in each sample. The analysis showed differences of transcriptomes during the development of buckwheat seed. We identified numerous differentially expressed genes that exhibited distinct expression patterns. These genes have known or potential roles in development of buckwheat seed. Therefore, they are appealing candidates for further investigation of the gene expression and associated regulatory mechanisms related to development.

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Project description:Flavonoid is an important secondary metabolite, which makes an important contribution to plant resistance to abiotic stress and human health. Fagopyrum tataricum (Tartary buckwheat) itself contains more flavonoids, so exploring the regulation of Tartary buckwheat flavonoid synthesis can provide a solid theoretical basis for the cultivation of new Tartary buckwheat varieties with high nutrition. In this paper, we studied the role of FtMYBs in regulating the biosynthesis of flavonoids in Tartary buckwheat.

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Next Generation Sequencing Facilitates Quantitative Analysis of Tartary buckwheat Transcriptomes

Project description:Next Generation Sequencing Facilitates Quantitative Analysis of Tartary buckwheat Transcriptomes

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