Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Equus ovodovi isolate:ZDT4

ABSTRACT: Molecular identification of late and terminal Pleistocene Equus ovodovi from northeastern China

PROVIDER: PRJNA511614 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8386122.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Equus ovodovi isolate:ZDT9

Project description:Molecular identification of late and terminal Pleistocene Equus ovodovi from northeastern China

| PRJNA511619 | ENA

Equus ovodovi isolate:ZDT7

Project description:Molecular identification of late and terminal Pleistocene Equus ovodovi from northeastern China

| PRJNA512859 | ENA

Equus ovodovi isolate:ZDT9

Project description:Molecular identification of late and terminal Pleistocene Equus ovodovi from northeastern China

| PRJNA512861 | ENA

Equus ovodovi

Project description:Equus ovodovi overview

| PRJNA177446 | ENA

Equus ovodovi

Project description:Equus ovodovi Genome sequencing

| PRJNA234379 | ENA

Equus ovodovi isolate:ZDT7

Project description:Equus ovodovi isolate:ZDT7 Raw sequence reads

| PRJNA511615 | ENA

Molecular identification of late and terminal Pleistocene Equus ovodovi from northeastern China.

Project description:The extant diversity of horses (family Equidae) represents a small fraction of that occurring over their evolutionary history. One such lost lineage is the subgenus Sussemionus, which is thought to have become extinct during the Middle Pleistocene. However, recent molecular studies and morphological analysis have revealed that one of their representatives, E. ovodovi, did exist in Siberia during the Late Pleistocene. Fossil materials of E. ovodovi have thus far only been found in Russia. In this study, we extracted DNA from three equid fossil specimens excavated from northeastern China dated at 12,770-12,596, 29,525-28,887 and 40,201-38,848 cal. yBP, respectively, and retrieved three near-complete mitochondrial genomes from the specimens. Phylogenetic analyses cluster the Chinese haplotypes together with previously published Russian E. ovodovi, strongly supporting the assignment of these samples to this taxon. The molecular identification of E. ovodovi in northeastern China extends the known geographical range of this fossil species by several thousand kilometers to the east. The estimated coalescence time of all E. ovodovi haplotypes is approximately 199 Kya, with the Chinese haplotypes coalescing approximately 130 Kya. With a radiocarbon age of 12,770-12,596 cal. yBP, the youngest sample in this study represents the first E. ovodovi sample dating to the terminal Pleistocene, moving the extinction date of this species forwards considerably compared to previously documented fossils. Overall, comparison of our three mitochondrial genomes with the two published ones suggests a genetic diversity similar to several extant species of the genus Equus.

| S-EPMC6522033 | biostudies-literature

Ancient genomes reveal the extinction of an entire species within the horse family (Equus ovodovi) during the last 3,400 years

Project description:Our sequence data provided 26 mitochondrial genomes and 3 complete nuclear genomes for Equus (Sussemionus) ovodovi.

| PRJEB44527 | ENA

Expression data from Northeastern Indigenous and Large White longissimus dorsi

Project description:To understand the molecular basis of distinct pork quality in Chinese indigenous and Western breed, longissimus dorsi samples were collected from three adult Northeastern Indigenous and from three adult Large White. Total RNA was extracted and subjected to porcine Affymetrix Genechip. The study helps to elucidate the genetic mechnism of divergent pork quality and provide the theory basis for selection and genetic improvement of meat quality traits in porcine. Six longissimus dorsi samples were collected from three Northeastern Indigenous and from three Large White. Three Large White were control samples. Total RNA was extracted from each sample.Gene-expression profiling was performed for each RNA sample separately on the GeneChipÂ® Porcine Genome Array at CapitalBio Corporation (Beijing, China).

2016-09-02 | E-GEOD-24192 | biostudies-arrayexpress

Equidae Equus Equus burchellii

Project description:Equus burchellii Transcriptome

| PRJNA484551 | ENA