Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Actinemys marmorata

ABSTRACT: Actinemys marmorata Genome sequencing and assembly

PROVIDER: PRJNA512124 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	VOGN01.dat.gz	Other
	VOGN01.fasta.gz	Fasta.gz
	VOGN01.master.dat	Other
	SRR9043025_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Actinemys marmorata

Project description:Actinemys marmorata overview

| PRJNA777325 | ENA

Actinemys marmorata

Project description:Actinemys marmorata alternate pseudohaplotype genome sequencing

| PRJNA778209 | ENA

Actinemys marmorata

Project description:Actinemys marmorata principal pseudohaplotype genome sequencing

| PRJNA778210 | ENA

Actinemys marmorata

Project description:Actinemys marmorata Genomic Resources

| PRJNA777133 | ENA

Actinemys pallida

Project description:Actinemys pallida Genome sequencing and assembly

| PRJNA849250 | ENA

Muraenolepis marmorata

Project description:Muraenolepis marmorata Genome sequencing and assembly

| PRJNA760499 | ENA

Project description:Actinemys marmorata genome sequencing

| PRJNA782591 | ENA

Reference Genome of the Northwestern Pond Turtle, Actinemys marmorata.

Project description:The northwestern pond turtle, Actinemys marmorata, and its recently recognized sister species, the southwestern pond turtle, A. pallida, are the sole aquatic testudines occurring over most of western North America and the only living representatives of the genus Actinemys. Although it historically ranged from Washington state through central California, USA, populations of the northwestern pond turtle have been in decline for decades and the species is afforded state-level protection across its range; it is currently being considered for protection under the US Endangered Species Act. Here, we report a new, chromosome-level assembly of A. marmorata as part of the California Conservation Genomics Project (CCGP). Consistent with the reference genome strategy of the CCGP, we used Pacific Biosciences HiFi long reads and Hi-C chromatin-proximity sequencing technology to produce a de novo assembled genome. The assembly comprises 198 scaffolds spanning 2,319,339,408 base pairs, has a contig N50 of 75 Mb, a scaffold N50 of 146Mb, and BUSCO complete score of 96.7%, making it the most complete testudine assembly of the 24 species from 13 families that are currently available. In combination with the A. pallida reference genome that is currently under construction through the CCGP, the A. marmorata genome will be a powerful tool for documenting landscape genomic diversity, the basis of adaptations to salt tolerance and thermal capacity, and hybridization dynamics between these recently diverged species.

| S-EPMC9709993 | biostudies-literature

Actinemys pallida

Project description:Actinemys pallida alternate pseudohaplotype genome sequencing

| PRJNA810503 | ENA

Actinemys pallida

Project description:Actinemys pallida principal pseudohaplotype genome sequencing

| PRJNA810504 | ENA