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Genome-wide expression analysis of wild type, hda6, hdc1, and hda19 in short day conditions [RNA-seq]

ABSTRACT: Genome-wide expression analysis of wild type, hda6, hdc1, and hda19 in short day conditions [RNA-seq]

PROVIDER: PRJNA512228 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR8380412_1.fastq.gz	Fastqsanger.gz
	SRR8380412_2.fastq.gz	Fastqsanger.gz
	SRR8380413_1.fastq.gz	Fastqsanger.gz
	SRR8380413_2.fastq.gz	Fastqsanger.gz
	SRR8380414_1.fastq.gz	Fastqsanger.gz

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Genome-wide expression analysis of wild type, hda6, hdc1, and hda19 in short day conditions [RNA-seq]

Project description:To investigate how HDC1, HDA6, and HDA19 regulate gene transcription and flowering time in short day conditions, we performed RNA deep sequencing (RNA-seq) to compare the transcriptomes of wild type, hdc1, hda6, and hda19 mutants grown in short day conditions with two biological repeats.

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Genome-wide expression analysis of wild type, hda6, hdc1, and hda19 in long day conditions [RNA-seq]

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Genome-wide analysis of histone H3 acetylation levels of wild type, hda6, hdc1, and hda19 in short day conditions [ChIP-seq]

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Genome-wide analysis of histone H3 acetylation levels of wild type, hda6, hdc1, and hda19 in short day conditions [ChIP-seq]

Project description:To investigate whether the expression of upregulated genes in hdc1 and hda19 is assoiated with histone acetylation levels increased in the hdc1 and hda19 mutants, We carried out ChIP-seq to examine histone H3 acetylation at the whole-genome level.

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Expression data in Arabidopsis hda6 mutant axe1-5 and its parental line DR5 under drought and control conditions

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Expression data in Arabidopsis hda6 mutant axe1-5 and its parental line DR5 under cold and control conditions.

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Expression data in Arabidopsis hda6 mutant axe1-5 and its parental line DR5 under cold and control conditions.

Project description:To understand the role of Arabidopsis histone deacetylase HDA6 in plant cold acclimation, we have employed transcriptional profiling of the hda6 mutant and its parental line under cold and control conditions to identify genes differentially expressed in the hda6 mutant under cold and control conditions. Aligent’s Whole Arabidopsis Gene Expression Microarray (G2519F, V4, 4x44K) were used. Arabidopsis hda6 mutant axe1-5 and its parental line DR5 were grown in MS agar plates for 2 weeks (16 hours light / 8 hours dark). For cold treated sample, the plants were subjected for cold treatment at 2?C for 3 days (12 hours light / 12 hours dark). Then total RNA was prepared and used for the microarray hybridization. Three replicative hybridization experiments for each array were carried out using the independent biological samples.

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Expression data in Arabidopsis hda6 mutant axe1-5 and its parental line DR5 under drought and control conditions

Project description:To understand the role of Arabidopsis histone deacetylase HDA6 in drought tolerance, we have employed transcriptional profiling of the hda6 mutant and its parental line under drought and control conditions to identify genes differentially expressed in the hda6 mutant under drought and control conditions. Aligent's Whole Arabidopsis Gene Expression Microarray (Agilent-015059, G2519F, V3, 4x44K) was used. Arabidopsis hda6 mutant axe1-5 and its parental line DR5 were grown in soil for 3 weeks (16 hours light / 8 hours dark). For drought-treated sample, the plants were subjected to drought by withhelding water supply for indicated days. Then total RNA was prepared from the above-ground tissue and used for the microarray hybridization. Three replicative hybridization experiments for each array were carried out using the independent biological samples.

2017-04-29 | E-GEOD-46365 | biostudies-arrayexpress

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