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Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi [Phanerochaete chrysosporium]

ABSTRACT: Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi [Phanerochaete chrysosporium]

PROVIDER: PRJNA515512 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR8448310_1.fastq.gz	Fastqsanger.gz
	SRR8448310_2.fastq.gz	Fastqsanger.gz
	SRR8448311_1.fastq.gz	Fastqsanger.gz
	SRR8448311_2.fastq.gz	Fastqsanger.gz
	SRR8448312_1.fastq.gz	Fastqsanger.gz

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Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi [Phanerochaete chrysosporium]

Project description:The evolution of complex multicellularity has been one of the major transitions in the history of life. In contrast to simple multicellular aggregates of cells, it has evolved only in a handful of lineages, including the animals, embryophytes, red and brown algae and fungi. Despite being a key step towards the evolution of complex organisms, the evolutionary origins and the genetic underpinnings of complex multicellularity are incompletely known. We constructed a reference atlas of mushroom formation based on developmental transcriptome data of six species and comparisons of >200 whole genomes, to elucidate the core genetic program of complex multicellularity and fruiting body development in mushroom-forming fungi (Agaricomycetes). Nearly 300 conserved gene families and >70 functional groups contained developmentally regulated genes from five to six species, covering functions related to fungal cell wall (FCW) remodeling, targeted protein degradation, signal transduction, adhesion and small secreted proteins (including effector-like orphan genes). Several of these families, including F-box proteins, expansin-like proteins, protein kinases, and transcription factors, showed expansions in Agaricomycetes, with from which many convergently expandedwere identified in multicellular plants and/or animals too, assuming convergent solutions to genetic hurdles imposed by complex multicellularity among independently evolved lineages. This study provides a novel entry point to studying mushroom development and complex multicellularity in one of the largest clades of complex eukaryotic organisms.

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Phanerochaete chrysosporium gene expression in different media

Project description:Transcript profiles of Phanerochaete chrysosporium grown on different substrates were analyszed. Array design was based on the DoE's Joint Genome Institute's gene models for P. chrysosporium version s. The research goal is to identify genes essential for lignocellulose depolymerization.

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Project description:The transcriptome of Phanerochaete chrysosporium control mycelium was compared to the transcriptome of mycelium grown on oak acetonic extractives containing medium. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, Department of Energy) Phanerochaete chrysosporium genome sequence version 1. The aim of this study was to determine gene expression changes in Phanerochaete chrysosporium grown on oak extract with a special focus on detoxification systems.

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Effect of Oak extractives on the gene expression of Phanerochaete chrysosporium

Project description:Illumina HiSeq2500 technology was used to generate mRNA profiles from Phanerochaete chrysosporium treated with oak extractives for 1, 3 and 6h. 125bp pair-end reads were generated and aligned to the P.chrysosporium reference transcripts. (https://genome.jgi.doe.gov/Phchr2/Phchr2.home.html) using CLC Genomics Workbench 9.

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Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi

Project description:Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi

| PRJNA515510 | ENA