Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Microbiomes of tropical forest soils of southern Vietnam

PROVIDER: PRJNA518023 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8511350_1.fastq.gz	Fastqsanger.gz
	SRR8511350_2.fastq.gz	Fastqsanger.gz
	SRR8511360_1.fastq.gz	Fastqsanger.gz
	SRR8511360_2.fastq.gz	Fastqsanger.gz
	SRR8511370_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 72

Similar Datasets

Additional data for construction of the Environmental Molecular Network (ENVnet)

Project description:These are the additional files that were not already in public repositories for this manuscript. These samples are negative ionization mode, organic matter metabolomics datasets from many distinct environments, including global cropland; dryland; late Pleistocene-aged permafrost; temperate and tropical forest soils; rivers and lakes; and ocean DOM.

| MSV000095785 | MassIVE

Implications of the use of organic fertilizers for Antibiotic Resistant Gene dissemination in agricultural soils and fresh food products. A plot-scale study

Project description:The spread of antibiotic resistance genes (ARG) into agricultural soils, products, and foods severely limits the use of organic fertilizers in agriculture. In this study, experimental land plots were fertilized, sown, and harvested for two consecutive agricultural cycles using either mineral or three types of organic fertilizers: sewage sludge, pig slurry, or composted organic fraction of municipal solid waste. The analysis of the relative abundances of more than 200,000 ASV (Amplicon Sequence Variants) allowed the identification of a small, but significant (<10%) overlap between soil and fertilizer microbiomes, particularly in soils sampled the same day of the harvest (post-harvest soils). Loads of clinically relevant ARG were significantly higher (up to 100 fold) in fertilized soils relative to the initial soil. The highest increases corresponded to post-harvest soils treated with organic fertilizers, and they correlated with the extend of the contribution of fertilizers to the soil microbiome. Edible products (lettuce and radish) showed low, but measurable loads of ARG (sul1 for lettuces and radish, tetM for lettuces). These loads were minimal in mineral fertilized soils, and strongly dependent on the type of fertilizer. We concluded that at least part of the observed increase on ARG loads in soils and foodstuffs were actual contributions from the fertilizer microbiomes. Thus, we propose that adequate waste management and good pharmacological and veterinarian practices may significantly reduce the potential health risk posed by the presence of ARG in agricultural soils and plant products.

2021-07-09 | GSE179685 | GEO

Project description:Karst soils from a tropical forest

| PRJNA641882 | ENA

SARST analysis of arctic soil samples

Project description:Analysis of microbial community composition in arctic tundra and boreal forest soils using serial analysis of ribosomal sequence tags (SARST). Keywords: other

2004-01-12 | GSE949 | GEO

soil metagenome

Project description:Fungal communities in tropical forest soils Metagenome

| PRJNA270839 | ENA

tropical dry forest soils

Project description:tropical dry forest soils Raw sequence reads

| PRJNA433349 | ENA

Project description:Hurricane Otto impacts on a tropical forest soils

| PRJNA646467 | ENA

Project description:H.pylori in Southern Vietnam

| PRJNA689207 | ENA

18S rRNA sequences across Panama tropical forest soils