Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Data from targeted capture of conserved squamate loci (SqCL) in the Matuwa, WA lizard community

PROVIDER: PRJNA518083 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8512760_1.fastq.gz	Fastqsanger.gz
	SRR8512760_2.fastq.gz	Fastqsanger.gz
	SRR8512770_1.fastq.gz	Fastqsanger.gz
	SRR8512770_2.fastq.gz	Fastqsanger.gz
	SRR8512780_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 82

Similar Datasets

Squamata

Project description:Squamate reptile UCEs Targeted loci

| PRJNA390821 | ENA

gut metagenome

Project description:Lizard gut microbiota Targeted loci environmental

| PRJNA312520 | ENA

gut metagenome

Project description:Lizard gut microbiome Targeted Locus (Loci)

| PRJNA293117 | ENA

Project description:HPV capture data Targeted Locus (Loci)

| PRJNA234775 | ENA

snake metagenome

Project description:Bacterial 16S rRNA from Squamate reptiles. Targeted Locus (Loci)

| PRJNA272862 | ENA

Identification of Hedgehog signaling responsive genes in A. sagrei and M. musculus via transcriptional profiling

Project description:The brown anole lizard, Anolis sagrei, is an emerging squamate model for developmental and functional genetic studies. To develop additional tools and resources for mechanistic studies of signaling pathways and cellular processes in A. sagrei, we established an in vitro system. Using this approach, we studied Hedgehog (Hh) signaling, one of the key developmental signaling pathways, which has evolved across the metazoa. We investigated Hh pathway-induced transcriptional changes in two evolutionarily distinct tetrapods: A. sagrei, and M. musculus, to identify the species-specific and evolutionarily shared responses. We report that ~45 % of genes induced as a response to Hh pathway activation in A. sagrei, are shared with M. musculus. To further increase the versatility of A. sagrei as a squamate model system for gene editing and genomic studies, we established and characterized a new immortalized A. sagrei embryonic fibroblast cell line ASEC-1. We performed whole-genome sequencing analysis to annotate the set of polymorphisms within this cell line. We conclude that transcriptome characterization of the ASEC-1 cell line would permit further investigations dissecting the complex biological and evolutionary aspects of Hh signaling.

2023-12-15 | GSE242114 | GEO

High-resolution DNase-seq profiles of targeted loci in mES-derived primitive ectoderm

Project description:The aim of this experiment was to profile DNase-I accessibility at a subset of genomic regions in extremely high coverage. After DNase-I treatment, DNA fragments from specific loci were targeted using bead capture, amplified, and sequenced.

2015-04-11 | E-MTAB-3497 | biostudies-arrayexpress

Multiplexed Chromatin Conformation Capture in Mouse Erythroid cells using Capture-C

Project description:Multiplexed Chromatin Conformation Capture in Mouse Erythroid cells , from hundreds of targeted loci, using agilent oligo capture technology and high throughput sequencing.

2013-12-21 | GSE47758 | GEO

Multiplexed Chromatin Conformation Capture in Mouse Erythroid cells using Capture-C

Project description:Multiplexed Chromatin Conformation Capture in Mouse Erythroid cells , from hundreds of targeted loci, using agilent oligo capture technology and high throughput sequencing. Two erythroid Ter119+ cell replicates and a mouse ES cell control

2013-12-21 | E-GEOD-47758 | biostudies-arrayexpress

Project description:Fungal Soil Community Targeted loci

| PRJNA349439 | ENA