Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rhizobium laguerreae strain:FB403

ABSTRACT: Rhizobium laguerreae FB403 genome sequencing

PROVIDER: PRJNA519178 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR8872907_1.fastq.gz	Fastqsanger.gz
	SRR8872907_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Rhizobium laguerreae

Project description:Rhizobium laguerreae genome sequencing

| PRJNA1079530 | ENA

Rhizobium laguerreae

Project description:Rhizobium laguerreae overview

| PRJNA520247 | ENA

Rhizobium laguerreae

Project description:Rhizobium laguerreae Genome sequencing and assembly

| PRJNA603738 | ENA

Rhizobium laguerreae strain:FB206

Project description:Rhizobium laguerreae strain:FB206 Genome sequencing and assembly

| PRJNA355904 | ENA

Rhizobium laguerreae strain:CECT 8280 | isolate:CECT 8280

Project description:Rhizobium laguerreae CECT 8280 genome sequencing

| PRJNA546726 | ENA

Rhizobium laguerreae strain:DSM 29977 | isolate:DSM 29977

Project description:Rhizobium laguerreae DSM 29977 genome sequencing

| PRJNA1115564 | ENA

Dissecting transcriptomic signatures of genotype x genotype interactions during the initiation of plant-rhizobium symbiosis

Project description:The genome X genome interactions between rhizobium and plant in the early interaction phase was evaluated using RNA-sequencing

2020-06-04 | GSE151705 | GEO

Differential analysis of host small RNAs identified conserved and new miRNAs that affect nodulation and strain selectivity in the Phaseolus vulgaris- Rhizobium etli symbiosis

Project description:We report an small RNA sequencing (sRNA-seq) approach to identify host sRNAs involved in the nitrogen fixing symbiosis between Mesoamerican Phaseolus vulgaris and Rhizobium etli strains with different degrees in nodulation efficiency. This approach identified conserved and known microRNAs (miRNAs) differentially accumulated in Mesoamerican P. vulgaris roots in response to a highly efficient strain, to a less efficient one or to both strains.

2020-11-01 | GSE155414 | GEO

plant genotype x rhizobium genotype interaction

Project description:Coevolutionary change requires reciprocal selection between interacting species, i.e., that the partner genotypes that are favored in one species depend on the genetic composition of the interacting species. Coevolutionary genetic variation is manifested as genotype ´ genotype (G ´ G) interactions for fitness from interspecific interactions. Although quantitative genetic approaches have revealed abundant evidence for G ´ G interactions in symbioses, the molecular basis of this variation remains unclear. Here we study the molecular basis of G ´ G interactions in a model legume-rhizobium mutualism using gene expression microarrays. We find that, like quantitative traits such as fitness, variation in the symbiotic transcriptome may be partitioned into additive and interactive genetic components. Our results suggest that plant genetic variation is the largest influence on nodule gene expression, and that plant genotype and the plant genotype ´ rhizobium genotype interaction determine global shifts in rhizobium gene expression that in turn feedback to influence plant fitness benefits. Moreover, the transcriptomic variation we uncover implicates regulatory changes in both species as drivers of symbiotic gene expression variation. Our study is the first to partition genetic variation in a symbiotic transcriptome, and illuminates potential molecular routes of coevolutionary change. We assayed gene expression using three biological replicates for each plant genotype × rhizobium genotype combination (4 combinations) for a total of 12 chips.

2012-05-01 | GSE29027 | GEO

sRNAs in Rhizobium etli differentially expressed during free-living and host-associated growth

Project description:89 small non-coding RNAs (ncRNAs) were identified in the soil-dwelling alpha-proteobacterium Rhizobium etli by comparing an extensive compilation of ncRNA predictions to intergenic expression data of a whole-genome tiling array. The differential expression levels of some of these ncRNAs during free-living growth and during interaction with the eukaryotic host plant may indicate a role in adaptation to changing environmental conditions.

2009-11-17 | GSE18580 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data