Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aphanobasidium pseudotsugae

ABSTRACT: Aphanobasidium pseudotsugae overview

PROVIDER: PRJNA520283 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8535705_subreads.fastq.gz	Fastqsanger.gz
	SRR8535706_subreads.fastq.gz	Fastqsanger.gz
	SRR8535707_subreads.fastq.gz	Fastqsanger.gz
	SRR8536097_1.fastq.gz	Fastqsanger.gz
	SRR8536097_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

Dendroctonus pseudotsugae

Project description:Draft genome of Dendroctonus pseudotsugae, the Douglas-fir beetle

| PRJNA901953 | ENA

Aphanobasidium pseudotsugae strain:OMC1630 | isolate:FBCC 2405

Project description:Aphanobasidium pseudotsugae OMC1630 Transcriptome - Ottogen1_T

| PRJNA519428 | ENA

Aphanobasidium pseudotsugae strain:OMC1630 | isolate:FBCC 2405

Project description:Aphanobasidium pseudotsugae OMC1630 Standard Draft genome sequencing

| PRJNA519429 | ENA

Zasmidium pseudotsugae isolate:BR-8-S5

Project description:Zasmidium pseudotsugae isolate:BR-8-S5 Genome sequencing and assembly

| PRJNA599411 | ENA

Chemical, Bioactivity, and Biosynthetic Screening of Epiphytic Fungus <i>Zasmidium pseudotsugae</i>.

Project description:We report the first secondary metabolite, 8,8'-bijuglone, obtained from pure cultures of the slow growing Douglas fir- (Pseudotsuga menziesii var. menziesii) foliage-associated fungus Zasmidium pseudotsugae. The quinone was characterized using extensive LC/MS and NMR-based spectroscopic methods. 8,8'-Bijuglone exhibited moderate antibiotic activity against Gram-positive pathogens and weak cytotoxic activity in the NCI-60 cell line panel and in our in-house human colon carcinoma (HCT-116) cell line. An analysis of the fungal genome sequence to assess its metabolic potential was implemented using the bioinformatic tool antiSMASH. In total, 36 putative biosynthetic gene clusters were found with a majority encoding for polyketides (17), followed by non-ribosomal peptides (14), terpenes (2), ribosomal peptides (1), and compounds with mixed biosynthetic origin (2). This study demonstrates that foliage associated fungi of conifers produce antimicrobial metabolites and suggests this guild of fungi may present a rich source of novel molecules.

| S-EPMC7287617 | biostudies-literature

Genome sequencing of the endosymbiotic consortium and mitochondrion of Cinara (Cinara) cf. splendens/pseudotsugae species voucher ACOE3390

Project description:Genome sequencing of the endosymbiotic consortium and mitochondrion of Cinara (Cinara) cf. splendens/pseudotsugae species voucher ACOE3390

| PRJEB31197 | ENA

Genome sequencing of the endosymbiotic consortium and mitochondrion of Cinara pseudotsugae sensu Palmer, 1952 species voucher ACOE2889

Project description:Genome sequencing of the endosymbiotic consortium and mitochondrion of Cinara pseudotsugae sensu Palmer, 1952 species voucher ACOE2889

| PRJEB31194 | ENA

Divergent Patterns of Endogenous Small RNA Populations From Seed and Vegetative Tissues of Glycine max

Project description:An overview of small RNAs sequences existing in seed development and contrasted with vegetative tissues of the soybean

2012-10-09 | GSE36728 | GEO

Tbx6b ChIP-chip on Ciona intestinalis embryo (early gastrula)

Project description:A genomic overview of in vivo binding of a transcription factor Tbx6b in the ascidian early gastrula embryo.

2010-03-09 | GSE17694 | GEO

SoxC ChIP-chip on Ciona intestinalis embryo (early gastrula)

Project description:A genomic overview of in vivo binding of a transcription factor SoxC in the ascidian early gastrula embryo.

2010-03-09 | GSE17692 | GEO