Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Coral metagenome

ABSTRACT: 2 uncultured phage metagenomes collected from Acropora millepora

PROVIDER: PRJNA52303 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR100536.fastq.gz	Fastqsanger.gz
	SRR100537.fastq.gz	Fastqsanger.gz
	SRR100538.fastq.gz	Fastqsanger.gz
	SRR107230.fastq.gz	Fastqsanger.gz
	SRR107231.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

coral metagenome

Project description:Uncultured bacteria 16S rRNA from Acropora millepora adults

| PRJNA208977 | ENA

Whole Transcriptome analysis of the coral acropora millepora reveals complex responses to ocean acidification during the initiation of calcification

Project description:We used the Illumina RNAseq approach to study the effects of acute exposure to elevated CO2 on gene expression in primary polyps of Acropora millepora Examination of transcriptome in Acropora millepora primary polyps at 380, 750 and 1000 ppm CO2 after 3 days exposure

2012-04-10 | E-GEOD-33016 | biostudies-arrayexpress

Whole Transcriptome analysis of the coral acropora millepora reveals complex responses to ocean acidification during the initiation of calcification

Project description:We used the Illumina RNAseq approach to study the effects of acute exposure to elevated CO2 on gene expression in primary polyps of Acropora millepora

2012-04-10 | GSE33016 | GEO

Molecular response of the coral Acropora millepora to three settlement and/or metamorphosis induced stimuli

Project description:Two known settlement/metamorphosis inducing stimuli (crustose coralline algae, and ethanolic extract of crustose coralline algae) and one stimulus which just induces metamorphosis (LWamide) were used to stimulate competent planula larvae of the coral Acropora millepora. Samples were taken 0.5h, 4h and 12h post induction isolate the genes controlling settlement and metamorphosis in this coral.

2009-12-07 | GSE11709 | GEO

Coral thermal tolerance: tuning gene expression to resist thermal stress

Project description:Thermal history plays a role in the response of corals to subsequent heat stress. Prior heat stress can have a profound impact on later thermal tolerance, but the mechanism for this plasticity is not clear. The understanding of gene expression changes behind physiological acclimatization is critical in forecasts of coral health in impending climate change scenarios. Acropora millepora fragments were preconditioned to sublethal bleaching threshold stress for a period of 10 days; this prestress conferred bleaching resistance in subsequent thermal challenge, in which non-preconditioned coral bleached. Using microarrays, we analyze the transcriptomes of the coral host, comparing the bleaching-resistant preconditioned treatment to non-preconditioned and control treatments. This experiment compared host gene expression of Acropora millepora across control, non-preconditioned, and preconditioned treatments. Fragments were sampled prior to preconditioning (Day 4), following 10 days of thermal preconditioning (Day 20), and after two (Day 23), four (Day 25), and eight days (Day 29) of 31M-BM-0C thermal challenge. The analysis implements 45 arrays, representing 5 sampling points of three treatments (n=3).

2012-11-29 | E-GEOD-41435 | biostudies-arrayexpress

The acute transcriptional response of the coral Acropora millepora to immune challenge: expression of GiMAP/IAN genes links the innate immune response of corals with those of mammals and plants

Project description:This studies investigates the acute response of the coral Acropora millepora to two immunogenes: MDP (bacterial mimic) and pIC (viral mimic). Three members of the GiMAP familly were found to respond strongly to MDP treatment, showing analalogy to the immune response in vertebrates and plants.

2013-11-05 | GSE46389 | GEO

marine metagenome

Project description:3 uncultured phage metagenomes collected from Costa Rica

| PRJNA52305 | ENA

Rapid acclimation of juvenile corals to CO2-mediated acidification by up-regulation of HSP and Bcl-2 genes

Project description:We compared the effect of acute (Moya et al 2012) and chronic exposure to elevated pCO2 on gene expression in primary polyps of Acropora millepora Examination of transcriptome in Acropora millepora primary polyps at 380 and 750 ppm CO2 (air) after 9 days exposure

2015-05-01 | E-GEOD-61114 | biostudies-arrayexpress

DNA of Coral Virome

Project description:DNA of Acropora millepora Coral Virome

| PRJEB23383 | ENA

marine metagenome

Project description:10 uncultured phage metagenomes collected from subarctic Pacific Ocean

| PRJNA52301 | ENA