Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Phytophthora ipomoeae

ABSTRACT: Phytophthora ipomoeae genome sequencing project

PROVIDER: PRJNA52437 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR066568.fastq.gz	Fastqsanger.gz
	SRR066569.fastq.gz	Fastqsanger.gz
	SRR066570.fastq.gz	Fastqsanger.gz
	SRR066571.fastq.gz	Fastqsanger.gz
	SRR066572.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

Phytophthora ipomoeae PIC 99167

Project description:Phytophthora ipomoeae PIC 99167 genome sequencing

| PRJEA52689 | ENA

Periglandula ipomoeae IasaF13

Project description:Periglandula ipomoeae IasaF13 genome sequencing

| PRJNA67303 | ENA

Streptomyces ipomoeae

Project description:Streptomyces ipomoeae overview

| PRJNA42483 | ENA

Peteryoungia ipomoeae

Project description:Rhizobium ipomoeae overview

| PRJNA782709 | ENA

Streptomyces ipomoeae 91-03

Project description:Streptomyces ipomoeae 91-03 Genome sequencing

| PRJNA42363 | ENA

Phytophthora phaseoli

Project description:Phytophthora phaseoli genome sequencing project

| PRJNA52439 | ENA

Phytophthora mirabilis

Project description:Phytophthora mirabilis genome sequencing project

| PRJNA52429 | ENA

Streptomyces ipomoeae strain:B12321

Project description:Streptomyces ipomoeae B12321 genome sequencing and assembly

| PRJNA526936 | ENA

Phytophthora

Project description:Phytophthora infestans, P. mirabilis, and P. ipomoeae Illumina reads. Raw sequence reads

| PRJNA542680 | ENA

Arabidopsis thaliana/Phytophthora parasitica compatible interaction transcriptome

Project description:Oomycetes from the genus Phytophthora are fungus-like plant pathogens that are devastating for agriculture and natural ecosystems. Due to particular physiological characteristics, no treatments against diseases caused by oomycetes are presently available. To develop such treatments, it appears essential to dissect the molecular mechanisms that determine the interaction between Phytophthora species and host plants. The present project is focused on the molecular mechanisms that underlie the compatible plant-oomycete interaction and plant disease. The laboratory developed a novel interaction system involving the model plant, Arabidopsis thaliana, and Phytophthora parasitica, a soil-borne pathogen infecting a wide host range, thus representing the majority of Phytophthora species. A characteristic feature of the compatible Arabidopsis/P. parasitica interaction is an extended biotrophic phase, before infection becomes necrotrophic. Because the initial biotrophic phase is extremely short on natural (e.g. solanaceous) hosts, the Arabidopsis system provides the opportunity to analyze, for both interaction partners, the molecular events that determine the initiation of infection and the switch to necrotrophy. The present project aims at analyzing the compatible interaction between A. thaliana roots and P. parasitica. The Affymetrix A. thaliana full genome chip will be used to characterize modulations of the transcriptome occurring over a period of 24h from the onset of plant root infection to the beginning of necrotrophy. Parallel to this study, a custom-designed P. parasitica biochip will enable analyzing of P. parasitica gene expression during the same stages.

2010-04-20 | GSE20226 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data