Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shrimp gut and hepatopancreas metagenome

ABSTRACT: Digestive tract and Hepatopancreas of Shrimp Metagenome

PROVIDER: PRJNA524649 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8676470_1.fastq.gz	Fastqsanger.gz
	SRR8676470_2.fastq.gz	Fastqsanger.gz
	SRR8676480_1.fastq.gz	Fastqsanger.gz
	SRR8676480_2.fastq.gz	Fastqsanger.gz
	SRR8676490_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 192

Similar Datasets

Profiling of WSSV infection in hepatopancreas of shrimp

Project description:Profiles of gene expression in hepatopancreas isolated from shrimp experimentally infected with White Spot Syndrome Virus were compared to those of un-infected controls Keywords: response to viral disease Two groups of eight shrimp were compared in terms of hepatopancreas gene expression, 40 hours after challenge with White Spot Syndrome Virus

2010-07-01 | E-GEOD-4955 | biostudies-arrayexpress

Profiling of WSSV infection in hepatopancreas of shrimp

2006-06-01 | GSE4955 | GEO

Black tiger shrimp hepatopancreas metagenome

Project description:Black tiger shrimp hepatopancreas metagenome Metagenome

| PRJNA662111 | ENA

Identification of fatty acid regulatory genes using in silico analysis from Ovary and Hepatopancreas ESTs and cDNA microarray in the black tiger shrimp (Penaeus monodon)

Project description:Comparisons of gene expression profiles in hepatopancreas and ovary of domesticated broodstock at different ovarian maturation stages were made through a cDNA microarray in the black tiger shrimp (Penaeus monodon). Differentially expressed genes were identified through the microarray analysis, and the microarray results were confirmed by real-time PCR. Selected genes were further characterized.

2019-01-02 | GSE111471 | GEO

Shrimp transcriptome analysis after exposure to recombinant Vibrio parahaemolyticus PirA and PirB toxins

Project description:Vibrio parahaemolyticus is a Gram-negative bacterium commonly found in marine and estuarine environments. Acute hepatopancreatic necrosis disease (AHPND) caused by this bacterium is an ongoing problem among shrimp farming industries. V. parahaemolyticus proteins PirA and PirB have been determined to be major virulence factors that induce AHPND. In this study, Pacific white shrimp (Litopenaeus vannamei) were challenged with recombinant PirA and PirB by a reverse gavage method and then at 30 m, 1, 2, 4, and 6 h time points, the hepatopancreas of five individual shrimp were removed and placed into RNA later. We conducted RNA sequencing of the hepatopancreas samples from a no PirA/B control (n = 5) and PirA/B-treated shrimp at the different time intervals (n=5). We evaluated the different gene expression patterns between the time groups to the control with a focus on identifying differences in innate immune function.

2023-05-05 | GSE200137 | GEO

shrimp gut metagenome

Project description:shrimp gut metagenome Metagenome

| PRJNA507653 | ENA

shrimp gut metagenome

Project description:shrimp gut metagenome Metagenome

| PRJNA506860 | ENA

shrimp gut metagenome

Project description:shrimp gut metagenome Metagenome

| PRJNA331094 | ENA

shrimp gut metagenome

Project description:shrimp gut metagenome Metagenome