Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Enterococcus

ABSTRACT: Comparative Genomics of Wastewater Enterococcus spp

PROVIDER: PRJNA524668 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	WMFS01.dat.gz	Other
	WMFS01.fasta.gz	Fasta.gz
	WMFS01.master.dat	Other
	WMFT01.dat.gz	Other

Items per page:

1 - 5 of 115

Similar Datasets

Enterococcus spp.

Project description:Enterococcus spp.

| PRJEB53688 | ENA

Transcriptome analysis of Enterococcus faecalis OG1 delta-EF2638 mutant

Project description:Analysis of changes in gene expression in Enterococcus faecalis OG1 delta-EF2638 mutant compared to wild-type OG1 strain. The deletion mutant has a growth defect when grown with aeration The mutant presented in this study is described and characterized in Vesic, D. and Kristich, C.J. 2012. A Rex-family transcriptional repressor influnces H2O2 accumulation by Enterococcus faecalis. (submitted for publication) Microarray analysis was done using RNA isolated from two independent cultures of wild-type Enterococcus faecalis OG1 and two independent cultres of Enterococcus faecalis OG1 delta-EF2638 mutant; each RNA sample was subjected to triplicate hybridization (technical replicates) . Microarrays were custom designed to investigate expression of ORFs in Enterococcus faecalis OG1RF genome. The arrays were designed based on the OG1RF annotation generated with the Rapid Annotation Using Subsystem Technology (RAST) server (Aziz et. al. 2008. BMC Genomics 9:75), as described in Frank et al (2012) Infect. Immun. 80:539. The aim was eighteen probe pairs per ORF, each of which is present in triplicate.

2013-04-15 | E-GEOD-43228 | biostudies-arrayexpress

Enterococcus

Project description:Comparative genomic analysis of Enterococcus spp. isolated from bovine feces

| PRJNA342049 | ENA

Enterococcus faecium

Project description:Isolation of bacteriophages from wastewater sources on clinical Enterococcus spp. isolates

| PRJDB11414 | ENA

Enterococcus

Project description:Enterococcus spp. isolates from Estonia

| PRJNA630475 | ENA

Comparative genomic hybridization of several Enterococcus faecalis strains compared to strain V583

Project description:Gene content in various Enterococcus faecalis strains compared to E. faecalis V583. Strains have been compared to the V583 strain by comparative genomic hybridization using genome-wide PCR-based microarrays representing the V583 genome. Genes have been deemed "present" or "divergent" in the various strains.

2007-01-15 | E-MEXP-931 | biostudies-arrayexpress

Vancomycin-resistant Enterococcus faecium isolated from municipal Wastewater and hospitalized Humans

Project description:Comparative Genomics of Vancomycin-resistant Enterococcus faecium isolated from municipal Wastewater and hospitalized Humans

| PRJEB72879 | ENA

Effect of Gliotoxin on Enterococcus faecalis

Project description:Proteomic analysis of the effects of gliotoxin on Enterococcus faecalis.

2023-05-26 | MSV000092038 | MassIVE

Enterococcus faecalis

Project description:Isolation and characterization of bacteriophages from wastewater sources on Enterococcus spp. isolated from clinical samples

| PRJDB11351 | ENA

Enterococcus

Project description:Whole genome sequencing analysis of environmental vancomycin resistant Enterococcus spp. isolated from hospital wastewater to water resources

| PRJNA534186 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data