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ABSTRACT: nirK gene amplicon sequencing of Baiyang lake samples

PROVIDER: PRJNA524950 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR8669830_1.fastq.gz	Fastqsanger.gz
	SRR8669830_2.fastq.gz	Fastqsanger.gz
	SRR8669831_1.fastq.gz	Fastqsanger.gz
	SRR8669831_2.fastq.gz	Fastqsanger.gz
	SRR8669832_1.fastq.gz	Fastqsanger.gz

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Amplicon sequencing of a K562 cell line model with a patient-based t(3;8) translocation following CRISPR treatment

Project description:Genome editing was conducted on a t(3;8) K562 model to investigate the effects of deleting different modules or CTCF binding sites within the MYC super-enhancer. To check mutations after targeting with CRISPR-Cas9 we performed amplicon sequencing using the Illumina PCR-based custom amplicon sequencing method using the TruSeq Custom Amplicon index kit (Illumina). The first PCR was performed using Q5 polymerase (NEB), the second nested PCR with KAPA HiFi HotStart Ready mix (Roche). Samples were sequenced paired-end (2x 250bp) on a MiSeq (Illumina).

2021-07-26 | E-MTAB-9937 | biostudies-arrayexpress

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