Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metagenomic analysis of hotspring sediment samples from Ratnagiri district, Maharastra, India

PROVIDER: PRJNA525572 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8668510.fastq.gz	Fastqsanger.gz
	SRR8668507.fastq.gz	Fastqsanger.gz
	SRR8668508.fastq.gz	Fastqsanger.gz
	SRR8668509.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

miRNA Expression Profiles of Premalignant and Malignant Arsenic-Induced Skin Lesions

Project description:Total RNA was purified from keratinocytes isolated from FFPE arsenic-induced skin lesion samples collected from individuals exposed to high concentrations of arsenic exceeding 50 ppb in drinking water in Murshidibad district of West Bengal, India.

2018-06-01 | GSE102892 | GEO

Project description:Metagenomic analysis of soil samples of Yumesamdong Hotspring, North Sikkim, India

| PRJNA889719 | ENA

unidentified

Project description:Shotgun based metagenomic sequencing of water samples from Chumathang, Leh District, Ladakh, India

| PRJNA1036821 | ENA

hot spring metagenome

Project description:Metagenomic analysis of hotspring water samples from Candradimuka Crater, Banjarnegara, Indonesia

| PRJNA1123909 | ENA

Study of mRNA blueprint of Kharchia Local under salt stress

Project description:Kharchia local is an Indian tall landrace wheat cultivar. It is native to sodic-saline soils of Kharchia tehsil of the Pali district of Rajasthan, and is a line developed from selections from farmer's fields. It is the most salt tolerant wheat genotype found in India. No systematic study has been carried out in this direction so far. The gaps in understanding of the mechanism underlying salt tolerance limit our ability to improve the salt tolerance in other crop plants. Transcriptome analysis of Kharchia Local under salt stress will provide the insight into the genes involved in salinity tolerance.

2015-05-29 | E-MTAB-4433 | biostudies-arrayexpress

Project description:Metagenomic analysis of Hotspring soil samples of Kharasinpur Hot Spring, West Bengal

| PRJNA1083973 | ENA

Project description:Metagenomic analysis of soil microbiota under fluoride stress in the Purulia District, West Bengal, India

| PRJNA1154823 | ENA

microbiome of methane hydrate sediments: Hydrate Ridge

Project description:Gas hydrates, also known as clathrates, are cages of ice-like water crystals encasing gas molecules such as methane (CH4). Despite the global importance of gas hydrates, their microbiomes remain mysterious. Microbial cells are physically associated with hydrates, and the taxonomy of these hydrate-associated microbiomes is distinct from non-hydrate-bearing sites. Global 16S rRNA gene surveys show that members of sub-clade JS-1 of the uncultivated bacterial candidate phylum Atribacteria are the dominant taxa in gas hydrates. The Atribacteria phylogeny is highly diverse, suggesting the potential for wide functional variation and niche specialization. Here, we examined the distribution, phylogeny, and metabolic potential of uncultivated Atribacteria in cold, salty, and high-pressure sediments beneath Hydrate Ridge, off the coast of Oregon, USA, using a combination of 16S rRNA gene amplicon, metagenomic, and metaproteomic analysis. Methods were developed to extract bacterial cellular protein from these sediments, as outlined below. Sample Description Three sediments samples were collected from beneath Hydrate Ridge, off the coast of Oregon, USA. Sediments were cored at ODP site 1244 (44°35.1784´N; 125°7.1902´W; 895 m water depth) on the eastern flank of Hydrate Ridge ~3 km northeast of the southern summit on ODP Leg 204 in 2002 and stored at -80°C at the IODP Gulf Coast Repository. E10H5 sediment is from 68.5 meters below sediment surface interface C1H2 sediment is from 2 meters below sediment surface interface. C3H4 sediment is from 21 meters below sediment surface interface.

2020-01-22 | PXD012479 | Pride

Domas Crater - Acidic hot springs

Project description:Metagenomic analysis of hotspring water samples from Domas Crater - Acidic Hot springs, Indonesia

| PRJNA1117210 | ENA

Project description:Metagenomic Analysis of Arid Saline and Coastal Sediment Samples Collected from Dhanushkodi, Rameswaram, Tamil Nadu, India

| PRJNA879293 | ENA