Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Novel bacterial species

PROVIDER: PRJNA527356 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SOPU01.dat.gz	Other
	SOPU01.fasta.gz	Fasta.gz
	SOPU01.master.dat	Other
	SOPV01.dat.gz	Other

Items per page:

1 - 5 of 13

Similar Datasets

Fundicoccus fermenti strain:F-1

Project description:Novel indigo-reducing bacterial species

| PRJDB11871 | ENA

Novel species description

Project description:WGS analysis of novel bacterial species

| PRJEB31316 | ENA

Genome-wide identification and characterization of small RNAs in Rhodobacter capsulatus and identification of small RNAs affected by loss of the response regulator CtrA

Project description:We present the first genome-wide identification and characterizaion of 422 novel sRNAs in R. capsulatus. In addition we report a comparative analysis of conserved sRNAs across 24 bacterial species.

2017-04-05 | GSE82056 | GEO

Genomic taxonomy study of novel bacterial species

Project description:Genomic taxonomy study of novel bacterial species

| PRJEB63549 | ENA

Simultaneous quantification of multiple bacteria by the BactoChip microarray designed to target species-specific marker genes

Project description:We have designed and experimentally validated the BactoChip, a 60-mer oligonucleotide microarray for simultaneous detection and quantification of multiple bacterial species of clinical interest. The Bactochip microarray targets a novel set of high-resolution marker genes, those genes that most unequivocally characterized each bacterial species. The accuracy of the BactoChip microarray was evaluated using the labeled total DNA of single bacterial species at different concentrations (from 65ng to more than 250ng). The specificity of the developed array was further validated using mixed cultures containing up to 15 different bacterial species in even or staggered amount. We employed the Agilent 'Custom HD-CGH 8x15k Array" (catalogue number: G4427A) and the Agilent'Genomic DNA ULS labeling Kit" (catalogue number: 5190-0419). The microarray successfully distinguished among bacterial species from 21 different genera. The BactoChip additionally proved accurate in determining species-level relative abundances over a 10-fold dynamic range in complex bacterial communities. In combination with the continually increasing number of sequenced bacterial genomes, future iterations of the technology could enable to highly accurate clinically-oriented tools for rapid assessment of bacterial community composition and relative abundances.

2011-12-25 | E-MEXP-3420 | biostudies-arrayexpress

Project description:Novel bacterial species from MT1 and MT2 ISS missions

| PRJNA935338 | ENA

Project description:Characterisation of novel endophytic bacterial species isolated from Alnus glutinosa

| PRJNA894975 | ENA

genotyped_bacterial_meningitis

Project description:This study includes 1146 samples of host genotyping data (genotyped) from Illumina Omni arrays. Samples were collected from adults (>16 yrs) patients with CSF confirmed bacterial meningitis in the Netherlands between 2006 and 2015. Metadata includes patient outcome, species of bacteria, and for 467 samples a link to an ENA run with the associated bacterial genome (S. pneumoniae only).

| EGAD00010002328 | EGA

Project description:Novel mycobacterial species

| PRJNA759261 | ENA

Varibaculum

Project description:Varibaculum novel species

| PRJEB13299 | ENA