Warmwater fish species of Upper. St Lawrence River
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA528914 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR8782520_1.fastq.gz | Fastqsanger.gz | |||
| SRR8782520_2.fastq.gz | Fastqsanger.gz | |||
| SRR8782530_1.fastq.gz | Fastqsanger.gz | |||
| SRR8782530_2.fastq.gz | Fastqsanger.gz | |||
| SRR8782540_1.fastq.gz | Fastqsanger.gz |
Items per page: 5 1 - 5 of 114 |
Similar Datasets
Project description:Microbiome of St. Lawrence estuary sediments
| PRJEB28133 | ENA
Project description:St. Lawrence Estuary Beluga skin and water microbiome Raw sequence reads
| PRJNA841747 | ENA
Project description:Municipal wastewater effluent can impact its receiving environment. In the St. Lawrence River, male fish living downstream from Montreal exhibit increased hepatic vitellogenin, intersex, delayed spermatogenesis and altered immune function. Few studies have examined genome-wide effects associated with municipal effluent exposure in fish to decipher the mechanisms of toxicity. The present objective was to identify hepatic cellular signaling pathways in fathead minnows following exposure to municipal wastewater effluent. Immature minnows were exposed for 21 days to either 0% (Control) or 20% municipal effluent, the highest concentration in the St. Lawrence River. Hepatic RNA was extracted and used to hybridize a fathead minnow oligonucleotide microarray containing approximately 15K gene sequences.
2014-08-31 | GSE52693 | GEO
Project description:This SuperSeries is composed of the following subset Series: GSE24626: Validation data for Lawrence Livermore Microbial Detection Array version 2 GSE24699: Validation data for Lawrence Livermore Microbial Detection Array version 1 Refer to individual Series
2010-10-15 | E-GEOD-24700 | biostudies-arrayexpress
Project description:Ultraviolet absorbents (UVAs) and industrial antioxidants (IAs) are contaminants of emerging concern. In this study, we investigated the distribution and partitioning of these contaminants in surface water, suspended particulate matter (SPM), sediment, and various tissues of lake sturgeon (Acipenser fulvescens) and northern pike (Esox lucius) from the St. Lawrence River (SLR), Quebec, Canada. Results indicated that 2,6-di-tert-butyl-1,4-benzoquinone (BHTQ) was the dominant contaminant in the dissolved phase of the surface water, with median concentrations of 43, 15, and 123 ng/L for three sampling sites, respectively. Surface water collected downstream of a major city showed higher levels of various UVAs, BHTQ, and diphenylamine compared to the upstream, suggesting the influence of the urban activities on the contamination of these emerging contaminants in the SLR. SPM showed greater sorption capacities of most target contaminants compared to those of the sediment. Different contamination profiles were found in lake sturgeon and northern pike, implying that the accumulation of UVAs and IAs in fish depends on their feeding behavior. The field-based tissue-specific bioaccumulation factors (BAFs) for frequently detected contaminants (log BAF 1.5-4.2) were generally comparable to or lower than the Estimation Program Interface modeling results (1.4-5.0), indicating that some of these contaminants may be less bioaccumulative than previously expected.
| S-EPMC9022226 | biostudies-literature
Project description:St. Lawrence River Round Goby gut metagenome Raw sequence reads
| PRJNA988470 | ENA
Project description:Municipal wastewater effluent can impact its receiving environment. In the St. Lawrence River, male fish living downstream from Montreal exhibit increased hepatic vitellogenin, intersex, delayed spermatogenesis and altered immune function. Few studies have examined genome-wide effects associated with municipal effluent exposure in fish to decipher the mechanisms of toxicity. The present objective was to identify hepatic cellular signaling pathways in fathead minnows following exposure to municipal wastewater effluent. Immature minnows were exposed for 21 days to either 0% (Control) or 20% municipal effluent, the highest concentration in the St. Lawrence River. Hepatic RNA was extracted and used to hybridize a fathead minnow oligonucleotide microarray containing approximately 15K gene sequences. Sixteen samples were examined, 8 control samples and 8 exposed samples.
2014-08-31 | E-GEOD-52693 | biostudies-arrayexpress
Project description:Isotopic analysis of dog (Canis lupus familiaris) bone recovered from archaeological sites as proxies for human bone is becoming common in North America. Chronological placement of the dogs is often determined through radiocarbon dating of dog bone. The Great Lakes, their tributaries, and nearby lakes and streams were important fisheries for Native Americans prior to and after sustained European presence in the region. Carbon entering the food web in freshwater systems is often not in full isotopic equilibrium with the atmosphere, giving rise to spuriously old radiocarbon ages in fish, other aquatic organisms, and their consumers. These freshwater reservoir offsets (FROs) have been noted on human and dog bone in several areas of the world. Here we report the results of multi-tracer Bayesian dietary modeling using δ15N and δ13C values on dog bone collagen from mid-fifteenth to mid-sixteenth-century Iroquoian village sites at the headwaters of the St. Lawrence River, New York, USA. Results indicate that fish was an important component of dog diets. A comparison of radiocarbon dates on dog bone with dates on deer bone or maize from the same sites indicate FROs ranging from 97 ± 24 to 220 ± 39 14Cyr with a weighted mean of 132 ± 8 14Cyr. These results suggest that dog bone should not be used for radiocarbon dating in the absence of modeling to determine fish consumption and that previously reported radiocarbon dates on human bone from the larger region are likely to have FROs given the known importance of fish in regional human diets.
| S-EPMC6598671 | biostudies-literature
Project description:The fish gut microbiome plays an important role in nutrition absorption and energy metabolism. Studying the gut microbes of cold-water fish is important to understand the dietary adaptation strategies in extreme environments. In this study, the gut samples of Schizothorax wangchiachii (SW, herbivorous), Schizothorax kozlovi (SK, omnivorous), and Percocypris pingi (PP, carnivorous) in the upper Yangtze River were collected, and we sequenced 16S rRNA amplicon to study the potential relationship between gut microbes and host species. The results showed that gut microbial composition and diversity were significantly different between the three cold-water fishes. These fishes had different key taxa in their gut microbes, including bacteria involved in the breakdown of food (e.g., Cetobacterium, Aeromonas, and Clostridium sensu stricto 10). The highest alpha diversity indices (e.g., Chao 1 index) were identified in the herbivore (SW), followed by the carnivore (PP), and the lowest in the omnivore (SK). Non-metric multidimensional scaling (NMDS) results revealed that the gut microbial community of these species was different between host species. The neutral community model (NCM) showed that the microbial community structure of SW was shaped by stochastic processes, and the highest species dispersal was found in SW, followed by PP, and the lowest in SK. The results of niche breadth agreed with these findings. Our results demonstrated that host species influenced the gut microbiome composition, diversity, and microbial community assembly processes of the three cold-water fishes. These findings implied that the variation of gut microbiome composition and function plays a key role in digesting and absorbing nutrients from different foods in cold-water fish.
| S-EPMC9339683 | biostudies-literature
Project description:Striped Bass, Morone saxatilis (Walbaum, 1792), is an anadromous fish species that supports fisheries throughout North America and is native to the North American Atlantic Coast. Due to long coastal migrations that span multiple jurisdictions, a detailed understanding of population genomics is required to untangle demographic patterns, understand local adaptation, and characterize population movements. This study used 1,256 single nucleotide polymorphism (SNP) loci to investigate genetic structure of 477 Striped Bass sampled from 15 locations spanning the North American Atlantic coast from the Gulf of St. Lawrence, Canada, to the Cape Fear River, United States. We found striking differences in neutral divergence among Canadian sites, which were isolated from each other and US populations, compared with US populations that were much less isolated. Our SNP dataset was able to assign 99% of Striped Bass back to six reporting groups, a 39% improvement over previous genetic markers. Using this method, we found (a) evidence of admixture within Saint John River, indicating that migrants from the United States and from Shubenacadie River occasionally spawn in the Saint John River; (b) Striped Bass collected in the Mira River, Cape Breton, Canada, were found to be of both Miramichi River and US origin; (c) juveniles in the newly restored Kennebec River population had small and nonsignificant differences from the Hudson River; and (d) tributaries within the Chesapeake Bay showed a mixture of homogeny and small differences among each other. This study introduces new hypotheses about the dynamic zoogeography of Striped Bass at its northern range and has important implications for the local and international management of this species.
| S-EPMC7359840 | biostudies-literature