Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: ddRAD-seq data reveal significant genome-wide population structure and divergent genomic regions that distinguish the mallard and close relatives in North America

PROVIDER: PRJNA530757 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8842930.fastq.gz	Fastqsanger.gz
	SRR8842931.fastq.gz	Fastqsanger.gz
	SRR8842932.fastq.gz	Fastqsanger.gz
	SRR8842933.fastq.gz	Fastqsanger.gz
	SRR8842924.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Project description:Raw ddRAD-Seq 150bp SE Illumina Data for Mallard-like Ducks of North America

| PRJNA1108311 | ENA

Project description:Close relatives of Pseudoblepharisma tenue

| PRJNA1000070 | ENA

Expression profiling of the three clonotypic lineages of Toxoplasma gondii

Project description:Expression profiling of the three clonotypic lineages dominating T. gondii populations in North America and Europe provides a first comprehensive view of the parasite transcriptome.

2010-02-02 | GSE20145 | GEO

A Metagenomics Analysis of Pandemic 2009 H1N1 Infection in Patients in North America

Project description:The Virochip microarray (version 4.0) was used to detect viruses in patients from North America with unexplained influenza-like illness at the onset of the 2009 H1N1 pandemic.

2010-11-01 | GSE24034 | GEO

Genomic evidence for the Pleistocene and Recent population history of Native Americans

Project description:How and when the Americas were populated remains contentious. Using ancient and modern genome-wide data, we find that the ancestors of all present-day Native Americans, including Athabascans and Amerindians, entered the Americas as a single migration wave from Siberia no earlier than 23 thousand years ago (KYA), and after no more than 8,000-year isolation period in Beringia. Native Americans diversified into two basal genetic branches around 13 KYA, one in North and South America and the other restricted to North America. Subsequent gene flow resulted in some Native Americans sharing ancestry with present-day East Asians and Australo-Melanesians, the latter possibly through the ancestors of Aleutian Islanders. Putative relict populations in South America, including the historical Pericúes and Fuego-Patagonians, are not directly related to modern Australo-Melanesians.

2015-07-20 | GSE70987 | GEO

RNA-Seq Revealed Differences in Transcriptomes between 3ADON and 15ADON Populations of Fusarium graminearum

Project description:Fusarium graminearum is the major causal agent of Fusarium head blight (FHB) in North America and other regions of the world. The pathogen causes direct yield losses and produces various types of trichothecenes mycotoxins [Deoxynivalenol (DON) and its acetylated forms (3-acetyl-4-deoxynivalenol=3ADON and 15-acetyl-4-deoxvevalenol=15ADON), nivalenol (NIV). Recent studies indicated that 3ADON-type isolates were significantly increased in North America and China in recent years and appears to be more aggressive based on growth rate, disease severity on different cultivars, and DON production in vitro. Thus the overall objective of this this study was to understand the molecular mechanisms that make 3ADON- and 15ADON-type populations different during infection using a susceptible cultivar, and to compare the transcriptomes of the 3ADON- and 15ADON-type populations in vitro and in planta using the RNA-seq approach as well as to identify the expression differences of candidate genes related to aggressiveness and DON production.

2017-02-10 | GSE83735 | GEO

Project description:Raw ddRAD-Seq 150bp SE Illumina Data for Mallards of North America

| PRJNA1181028 | ENA

Transcriptome profiling of a beach-adapted wild legume for dissecting novel mechanisms of salinity tolerance

Project description:Strophostyles helvola is a close relative to common bean (Phaseolus vulgaris) and inhabits both coastal and non-coastal regions in North America. However, the mechanism of saline adaptation in S. helvola remains unclear. A transcriptome profiling would facilitate dissecting the underlying molecular mechanisms in salinity-adapted S. helvola. In this study, we reported the RNAseq analyses of two genotypes (a salt-tolerant beach genotype and a salt-sensitive inland genotype) of S. helvola stressed with salt. S. helvola plants were grown in pots and treated with half lethal-guided dose of NaCl solution for 3h, 24h, and 7d. The plants supplied with the same amount of water were used as controls. The whole roots sampled from the three time points were equally pooled as one biological replicate, and three replicates were used for library construction and transcriptome sequencing on Illumina Hiseq 2500. The comparative analyses of root transcriptomes presented here provides a valuable resource for discovery of genes and networks involved in salt tolerance in S. helvola.

2018-12-06 | GSE121143 | GEO

Project description:Resequencing of Daucus carota or close relatives

| PRJNA865653 | ENA

Project description:Genome-wide ddRAD-Seq data of three freshwater mussel species in North America

| PRJNA454895 | ENA