Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Differential lncRNA expression upon hypoxia affects splicing efficiency

ABSTRACT: Differential lncRNA expression upon hypoxia affects splicing efficiency

PROVIDER: PRJNA530983 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10502300.fastq.gz	Fastqsanger.gz
	SRR10502301.fastq.gz	Fastqsanger.gz
	SRR10502302.fastq.gz	Fastqsanger.gz
	SRR10502303.fastq.gz	Fastqsanger.gz
	SRR10502304.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 69

Similar Datasets

Differential lncRNA expression upon hypoxia affects splicing efficiency

Project description:RNA sequencing was performed to identify long non-coding RNAs that are dysregulated upon hypoxia in breast cancer. Subsequently, the effect on splicing effiency (intron retention, exon skipping …) was investigated from RNA sequencing analysis upon knockdown of the candidate lncRNA and upon hypoxia.

2019-04-05 | GSE129344 | GEO

lncRNA SCIRT in hypoxia/reoxygenation.

Project description:lncRNA SCIRT in hypoxia/reoxygenation.

| PRJNA794182 | ENA

lncRNA SCIRT in hypoxia/reoxygenation.

Project description:To know effects of long noncoding RNA (lncRNA) SCIRT in hypoxia/reoxygenation (H/R). We compared expression profiles of human umbilical vein endothelial cells (HUVECs) under normal condition, H/R condition without SCIRT knockdown, and H/R condition with SCIRT knockdown.

2022-06-15 | GSE193048 | GEO

Hypoxia-Acidosis translation efficiency (TE) and mRNA expression analysis

Project description:Hypoxia-Acidosis translation efficiency (TE) and mRNA expression analysis

| PRJNA578854 | ENA

Investigation of lncRNA expression signatures in hypoxia-induced HCC cells

Project description:To investigate the differentially expressed lncRNAs between hypoxia-induced Hep3B cells and normoxia cultured Hep3B cells, Arraystar Human LncRNA Microarray V5.0 is employed for the global profiling of human LncRNAs and protein-coding transcripts.

2020-08-01 | GSE155505 | GEO

Estrogen receptor β affects hypoxia response in colorectal cancer cells

Project description:Estrogen receptor β affects hypoxia response in colorectal cancer cells

| PRJNA956954 | ENA

HuR-dependent translation efficiency (TE) and mRNA expression analysis in hypoxia.

Project description:HuR-dependent translation efficiency (TE) and mRNA expression analysis in hypoxia.

| PRJNA528039 | ENA

Investigation of lncRNA expression signatures in hypoxia-induced HCC cells

Project description:Investigation of lncRNA expression signatures in hypoxia-induced HCC cells

| PRJNA649957 | ENA

Identification of interacting proteins of lncRNA HIF1α-AS1

Project description:LncRNA Hypoxia-inducible factor 1α-antisense 1 (HIF1α-AS1) is located on the antisense strand of the important Hypoxia-inducible factor 1α (HIF1α) gene, but being transcribed in antisense direction along the HIF1α promoter. Here we used the 3’end biotinylated HIF1a-AS1 RNA and a control RNA for RNA Pulldown and searched for interacting proteins in nuclear extracts of human umbilical vein endothelial cells (HUVEC).

2022-09-23 | PXD023512 | Pride

Hypoxia-Acidosis translation efficiency (TE) and mRNA expression analysis

Project description:mRNA TE and steady-state levels were measured in normoxic, normoxia-acidosis, hypoxia, hypoxia acidosis U87MG from RNA seq of ribosome density fractionation.

2020-04-23 | GSE139233 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data