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Bacteria

ABSTRACT: Genome of Iron reducing bacteria and sulfur reducing bacteria in tidal flat sediment in Korea

PROVIDER: PRJNA532519 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	SWCI01.dat.gz	Other
	SWCI01.fasta.gz	Fasta.gz
	SWCI01.master.dat	Other
	SWCJ01.dat.gz	Other

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1 - 5 of 13

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Mechanisms underlying growth inhibition of a denitrifier by reduced sulfur compounds

Project description:Competition among nitrate reducing bacteria (NRB) and sulfate reducing bacteria (SRB) for resources in anoxic environments is generally thought to be governed largely by thermodynamics. It is now recognized that intermediates of nitrogen and sulfur cycling (e.g., hydrogen sulfide, nitrite, etc.) can also directly impact NRB and SRB activities in freshwater, wastewater and sediment, and therefore may play important roles in competitive interactions. Here, using Intrasporangium calvum C5 as a model NRB, we performed comparative transcriptomic and metabolomic analyses to demonstrate that the reduced sulfur compounds cysteine and sulfide differentially inhibit respiratory growth on nitrate, and that inhibition by each can be selectively relieved by a specific carbon source. These findings provide mechanistic insights into the interplay and stratification of NRBs and SRBs in diverse environments.

2020-10-01 | GSE158822 | GEO

Responses to different sulfur sources reveal the complicated and interlinked sulfur metabolism pathways of a deep-sea sulfate reducing bacterium

Project description:Sulfur metabolism in the deep-sea cold seep has been mentioned to have an important contribution to the biogeochemical cycle of sulfur in previous studies. And sulfate reducing bacteria have also been considered to be a dominant microbial population in the deep-sea cold seep and play a crucial role in this process. However, most of sulfate reducing bacteria from cold seep still cannot be purely cultured under laboratory conditions, therefore the actual sulfur metabolism pathways in sulfate reducing bacteria from the deep-sea cold seep have remained unclear. Here, we isolate and pure culture a typical sulfate reducing bacterium Desulfovibrio marinus CS1 from the sediment sample of the deep-sea cold seep in the South China Sea, which provides a probability to understand the sulfur metabolism in the cold seep.

2024-06-16 | PXD023247 | Pride

Iron-reducing bacteria 1

Project description:Iron-reducing bacteria 1 Raw sequence reads

| PRJNA314288 | ENA

Syntrophotalea carbinolica

Project description:Iron- and sulfur-reducing bacterium

| PRJNA35461 | ENA

Project description:microbial diversity of tidal flat sediment

| PRJNA774167 | ENA

Project description:Sedimentary bacteria in the tidal flat

| PRJNA906945 | ENA

Syntrophotalea carbinolica DSM 2380

Project description:Iron- and sulfur-reducing anaerobe isolated from sediment and sludge

| PRJNA13337 | ENA

sediment metagenome

Project description:Tidal flat Genome sequencing

| PRJNA306726 | ENA

sediment metagenome

Project description:Tidal flat Metagenome

| PRJNA183665 | ENA

LC-MS/MS of autotrophic culture KS, that performs nitrate reduction coupled to iron(II) oxidation (NDFO)

Project description:Nitrate-reducing iron(II)-oxidizing bacteria are widespread in the environment contribute to nitrate removal and influence the fate of the greenhouse gases nitrous oxide and carbon dioxide. The autotrophic growth of nitrate-reducing iron(II)-oxidizing bacteria is rarely investigated and poorly understood. The most prominent model system for this type of studies is enrichment culture KS, which originates from a freshwater sediment in Bremen, Germany. To gain insights in the metabolism of nitrate reduction coupled to iron(II) oxidation under in the absence of organic carbon and oxygen limited conditions, we performed metagenomic, metatranscriptomic and metaproteomic analyses of culture KS. Raw sequencing data of 16S rRNA amplicon sequencing, shotgun metagenomics (short reads: Illumina; long reads: Oxford Nanopore Technologies), metagenome assembly, raw sequencing data of shotgun metatranscriptomes (2 conditions, triplicates) can be found at SRA in https://www.ncbi.nlm.nih.gov/bioproject/PRJNA682552. This dataset contains proteomics data for 2 conditions (heterotrophic and autotrophic growth conditions) in triplicates.

2021-05-17 | PXD023186 | Pride

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