Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Identification and mapping of eastern filbert blight resistance QTL in european hazelnut using ddRADseq

PROVIDER: PRJNA542160 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9036520.fastq.gz	Fastqsanger.gz
	SRR9036520_1.fastq.gz	Fastqsanger.gz
	SRR9036520_2.fastq.gz	Fastqsanger.gz
	SRR9036530.fastq.gz	Fastqsanger.gz
	SRR9036530_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 735

Similar Datasets

Project description:Evaluating Genetic Diversity of Eastern Filbert Blight Resistant European Hazelnut (Corylus avellana) Germplasm Using a Genotyping-by-Sequencing Approach

| PRJNA758015 | ENA

Project description:Segregation of Eastern Filbert Blight Disease Response and Single Nucleotide Polymorphism Markers in Three Hybrid European-American Interspecific Hazelnut Populations

| PRJNA755895 | ENA

Next generation sequencing of leaf transcriptome from taro (Colocasia esculenta) cultivars Niue, Palau 10, and Sam-07

Project description:Despite the fact that taro, colocasia esculenta, is an important staple food for millions of people around the world, its genome and transcriptome sequence has not yet been investigated. The objective of this study was to generate transcriptome sequence information from taro cultivars Niue, Palau 10, and Sam-07. Niue and Sam-07 are highly susceptible to the taro leaf blight (TLB) disease caused by Phytophthora colocasiae, to which Palau 10 is resistant. The analysis of the taro transcriptome will facilitate gene discovery, including genes that are responsible for TLB-resistance. Moreover, microsatellites (SSRs) developped from these data will be useful for marker-assisted breeding of improved taro cultivars, QTL mapping, and characterization of the genetic diversity in taro.

2018-09-30 | GSE87777 | GEO

Transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines

Project description:Fusarium graminearum causes Fusarium head blight (FHB), which represents one of the major wheat diseases worldwide, determining reduction in grain quality, yield and the accumulation of mycotoxins. To mine the molecular response associated to the wheat 2DL FHB resistance quantitative trait locus (QTL), derived from the cultivar Wuhan-1, and to identify candidate genes implicated in such resistance, a comprehensive transcriptomic analysis of the early response to F. graminearum infection at 3 days post inoculation of spikelet and rachis was performed with the RNA-Seq and miRNA-Seq techniques. The analyses were conducted on two Near Isogenic Lines (NILs) differing for the presence of the 2DL QTL (2-2618, resistant 2DL+ and 2-2890, susceptible null).

2018-02-28 | E-MTAB-6383 | biostudies-arrayexpress

Gene expression in near isogenic spring wheat lines carrying or not the 2DL FHB resistance QTL during early infection with Fusarium graminearum, the major causal agent of fusarium head blight in wheat

Project description:Fusarium head blight (FHB) is a major disease of cereal crops caused by the fungus Fusarium graminearum (Fg). FHB affects the flowering heads (or spikes). This study compare the gene expression profile in wheat spikelets from near isogenic spring wheat lines carrying or not the FHB resistance QTL 2DL, after inoculation with water (H2O) or Fg; two inoculation methods were also compared, point and spray inoculation.

2015-06-03 | GSE54550 | GEO

Time-course expression QTL atlas of the global transcriptional response of wheat to Fusarium graminearum

Project description:We have captured transcriptomes of 196 doubled haploid wheat lines segregating for Fusarium head blight resistance after inoculation with the pathogen Fusarium graminearum at 30 and 50 hours after inoculation. The pathogen switches from biotrophic to nectrotrophic lifestyle in course of disease development forcing its host to adapt its defence strategies. We performed an eQTL analysis on both time points and describe the changing segregating response to the pathogen in time. Our analysis describes three major regulatory hotspots that govern the expression of 1000s of genes and eQTL colocalizing with phenotypic resistance QTL.

2016-11-16 | E-MTAB-5127 | biostudies-arrayexpress

Project description:Gummy Stem Blight resistance gene mapping

| PRJNA837290 | ENA

Expression QTL mapping of chicken femoral bone

Project description:Expression quantitative trait locus (QTL) mapping of 127 adult femoral bone samples from a Red Junglefowl x White Leghorn advanced intercross line. Bone trait QTL have been mapped in the same cross, allowing a genetical genomics approach to quantitative trait gene identification

2015-10-31 | E-MTAB-3141 | biostudies-arrayexpress

Project description:Drosophila melanogaster ethanol resistance QTL mapping

| PRJNA686135 | ENA

Project description:Mapping QTL for bakanae disease resistance

| PRJNA528640 | ENA