Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mouse gut metagenome

ABSTRACT: C57BL/6 mice Raw sequence reads of gut microbiota

PROVIDER: PRJNA543285 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9074990.fastq.gz	Fastqsanger.gz
	SRR9075000.fastq.gz	Fastqsanger.gz
	SRR9075010.fastq.gz	Fastqsanger.gz
	SRR9075020.fastq.gz	Fastqsanger.gz
	SRR9075030.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 46

Similar Datasets

mouse gut metagenome

Project description:mice gut microbiota Raw sequence reads

| PRJNA942057 | ENA

mouse gut metagenome

Project description:Mice gut microbiota Raw sequence reads

| PRJNA299207 | ENA

mouse gut metagenome

Project description:Gut Microbiome breed:C57BL/6J mice Raw sequence reads

| PRJNA294800 | ENA

Relating human gut metagenome and metaproteome

Project description:Gut microbiome research is rapidly moving towards the functional characterization of the microbiota by means of shotgun meta-omics. Here, we selected a cohort of healthy subjects from an indigenous and monitored Sardinian population to analyze their gut microbiota using both shotgun metagenomics and shotgun metaproteomics. We found a considerable divergence between genetic potential and functional activity of the human healthy gut microbiota, in spite of a quite comparable taxonomic structure revealed by the two approaches. Investigation of inter-individual variability of taxonomic features revealed Bacteroides and Akkermansia as remarkably conserved and variable in abundance within the population, respectively. Firmicutes-driven butyrogenesis (mainly due to Faecalibacterium spp.) was shown to be the functional activity with the higher expression rate and the lower inter-individual variability in the study cohort, highlighting the key importance of the biosynthesis of this microbial by-product for the gut homeostasis. The taxon-specific contribution to functional activities and metabolic tasks was also examined, giving insights into the peculiar role of several gut microbiota members in carbohydrate metabolism (including polysaccharide degradation, glycan transport, glycolysis and short-chain fatty acid production). In conclusion, our results provide useful indications regarding the main functions actively exerted by the gut microbiota members of a healthy human cohort, and support metaproteomics as a valuable approach to investigate the functional role of the gut microbiota in health and disease.

2017-07-19 | PXD005780 | Pride

mouse gut metagenome

Project description:Mice microbiota Raw sequence reads

| PRJNA741856 | ENA

mouse gut metagenome

Project description:Gut microbiota of mice under resveratrol intervention-Raw sequence reads

| PRJNA554960 | ENA

Multi-modal single cell analysis reveals gut microbiota reshapes brain immune landscape in aged mouse model.

Project description:We used 16S V3/V4 region amplification to evaluate the composition of bacteria species in mouse fecal pellets. Fecel pellets were collected from young-adult (12 weeks old) wild type C57Bl/6 mice and aged (72 weeks old) wild type C57Bl/6 mice after 21 days of vehicle or antibiotics treatment (to induce gut microbiota depletion). In one sequencing round, we sequenced a total of 12 different fecal samples (3 young control, 3 aged control, 3 young depleted gut microbiota (ABX) and 3 aged depleted gut microbiota (ABX)). Amplicons were indexed using the Nextera XT Index Kit and pooled into a library for Illumina sequencing.

2020-11-03 | GSE160628 | GEO

mouse gut metagenome

Project description:mouse gut microbiota Raw sequence reads

| PRJNA658450 | ENA

mouse gut metagenome

Project description:mouse gut microbiota Raw sequence reads

| PRJNA741854 | ENA

mouse gut metagenome

Project description:Mouse gut microbiota raw sequence reads

| PRJNA379878 | ENA