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Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation [ATAC-Seq]

ABSTRACT: Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation [ATAC-Seq]

PROVIDER: PRJNA543419 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR9077590_1.fastq.gz	Fastqsanger.gz
	SRR9077590_2.fastq.gz	Fastqsanger.gz
	SRR9077600_1.fastq.gz	Fastqsanger.gz
	SRR9077600_2.fastq.gz	Fastqsanger.gz
	SRR9077591_1.fastq.gz	Fastqsanger.gz

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Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation

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Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation [ChIP-Seq]

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Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation [RNA-Seq]

Project description:We show that Spen, an Xist binding repressor protein essential for XCI, binds to ancient retroviral RNA transcribed genome-wide, performing a surveillance role to recruit chromatin silencing machinery to these parasitic loci. Spen inactivation leads to de-repression of endogenous retroviral (ERV) elements in embryonic stem cells, with gain of chromatin accessibility, active histone modifications, and ERV RNA transcription. Spen binds directly to ERV RNAs that are highly similar to the A-repeat of Xist, a region critical for Xist-mediated gene silencing. ERV RNA and Xist A-repeat bind the RRM3 domain of Spen in a competitive manner and insertion of an ERV into an A-repeat deficient Xist rescues binding of Xist RNA to Spen.

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Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation [ATAC-Seq]

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Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation.

Project description:The Xist lncRNA mediates X chromosome inactivation (XCI). Here we show that Spen, an Xist-binding repressor protein essential for XCI , binds to ancient retroviral RNA, performing a surveillance role to recruit chromatin silencing machinery to these parasitic loci. Spen loss activates a subset of endogenous retroviral (ERV) elements in mouse embryonic stem cells, with gain of chromatin accessibility, active histone modifications, and ERV RNA transcription. Spen binds directly to ERV RNAs that show structural similarity to the A-repeat of Xist, a region critical for Xist-mediated gene silencing. ERV RNA and Xist A-repeat bind the RRM domains of Spen in a competitive manner. Insertion of an ERV into an A-repeat deficient Xist rescues binding of Xist RNA to Spen and results in strictly local gene silencing in cis. These results suggest that Xist may coopt transposable element RNA-protein interactions to repurpose powerful antiviral chromatin silencing machinery for sex chromosome dosage compensation.

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Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation

Project description:This SuperSeries is composed of the SubSeries listed below.

2020-05-16 | GSE131413 | GEO