Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA Seq In Isolated Crypts from Duodenum, Jejunum, and Ileum

ABSTRACT: RNA Seq In Isolated Crypts from Duodenum, Jejunum, and Ileum

PROVIDER: PRJNA543823 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9090970_1.fastq.gz	Fastqsanger.gz
	SRR9090970_2.fastq.gz	Fastqsanger.gz
	SRR9090971_1.fastq.gz	Fastqsanger.gz
	SRR9090971_2.fastq.gz	Fastqsanger.gz
	SRR9090972_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

RNA-seq of mouse small intestinal epithelial cells sorted from duodenum, jejunum and ileum

Project description:Results of RNA-seq of normal C57BL/6 small intestinal epithelial cells sorted from duodenum, jejunum and ileum separately. Samples are named as follow; mouse replicate number-duodenum(1), jejunum(2) or ileum(3). For example, 1-1, 1-2 and 1-3 representing duodenum, jejunum and ileum respectively from mouse replicate number 1.

2021-01-21 | E-MTAB-9744 | biostudies-arrayexpress

RNA Seq In Isolated Crypts from Duodenum, Jejunum, and Ileum

Project description:RNA was extracted from crypts from the three portions of the small intestine

2020-02-26 | GSE131438 | GEO

RNA-seq on FACS sorted paneth cells from the murine duodenum, jejunum and ileum

Project description:The small intestinal crypts harbour secretory Paneth cells (PCs), which express bactericidal peptides that are crucial for maintaining intestinal homeostasis. Considering the diverse environmental conditions throughout the course of the small intestine, multiple subtypes of PCs are expected to exist. We applied single cells RNA-sequencing of PCs combined with deep bulk RNA-sequencing on PC populations of different locations (duodenum, jejunum, ileum) and discovered several expression-based clusters. Some of these are discrete and resemble tuft cell-like PCs, goblet cell-like PCs, PCs expressing stem cell markers, and senescent PCs. Other clusters are less discrete, but based on bulk RNA-seq appear to be derived from different locations along the small intestinal tract. Furthermore, a comprehensive spatial analysis was conducted using the Resolve bioscience technique, identifying different PCs clusters along the small intestine, but not along the crypts themselves.

2024-03-07 | GSE255507 | GEO

Transcription profiling of human intestinal cells (Caco-2) and tissues from all intestinal segments (duodenum, jejunum, ileum, colon)

Project description:Affymetrix U95Av2 expression data from human intestinal cells (Caco-2) and tissues from all intestinal segments (duodenum, jejunum, ileum, colon). Entries contain the search terms glycosylase, phosphorylase, cytochrome or nucleoside, which were relevant to our search for enzymes capable of cleaving the N-glycosidic bond of nucleoside analog drugs.

2007-06-21 | E-GEOD-1862 | biostudies-arrayexpress

Gene expression profile of ileum, jejunum and colon

Project description:The gene expression of ileum, jejunum and colon.

2020-12-21 | GSE143342 | GEO

Transcriptome analysis in placenta, fetal duodenum and jejunum

Project description:We aimed to investigate the effects of maternal heat stress on the expression of differentilally expressed genes in th placenta, fetal duodenum and jejunum

2022-03-07 | GSE192968 | GEO

RNA-seq on FACS sorted paneth cells from the murine duodenum, jejunum and ileum

Project description:RNA-seq on FACS sorted paneth cells from the murine duodenum, jejunum and ileum

| PRJNA1075129 | ENA

RNA-seq of mouse small intestinal epithelial cells sorted from duodenum, jejunum and ileum

Project description:RNA-seq of mouse small intestinal epithelial cells sorted from duodenum, jejunum and ileum

| PRJEB41284 | ENA

Single-cell and spatial transcriptomics profile of porcine jejunum and ileum containing Peyer's patches

Project description:To establish better understanding of cells found in jejunal and ileal Peyer's patches of pigs, we utilized single-cell RNA sequencing scRNA-seq and spatial transcriptomics to recover and analyze cells and spatial regions from sections of jejunum and ileum containing Peyer's patches. Cells identified via single-cell RNA sequencing included B, T/innate lymphoid cell, myeloid, epithelial, and stromal lineage cells. Spatial dots recovered via spatial transcriptomics belonged to regions including villi, crypts, interfollicular/parafollicular zones, follicles, and muscularis. Overall, results provide new information on regional localization and transcriptional profiles of cells in the pig small intestine.

2023-09-12 | GSE232605 | GEO

Transcriptome analysis in placenta, fetal duodenum and jejunum

Project description:Transcriptome analysis in placenta, fetal duodenum and jejunum

| PRJNA793902 | ENA