Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil metagenome

ABSTRACT: Soil bacterial community composition under different crop-residue management and long-term field fertilization

PROVIDER: PRJNA543858 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9095650.fastq.gz	Fastqsanger.gz
	SRR9095660.fastq.gz	Fastqsanger.gz
	SRR9095670.fastq.gz	Fastqsanger.gz
	SRR9095680.fastq.gz	Fastqsanger.gz
	SRR9095690.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 288

Similar Datasets

soil metagenome

Project description:Soil bacterial community composition under different crop-residue managements and long-term field fertilization

| PRJNA545497 | ENA

soil metagenome

Project description:16S rRNA gene amplicon sequencing, soil samples from buckwheat field under long-term fertilization and crop rotation

| PRJDB15840 | ENA

Project description:Metagenome under fertilization management

| PRJNA639053 | ENA

Project description:soil mesofauna diversity under long-term fertilization.

| PRJNA1021404 | ENA

Soil bacterial communities under long-term fertilization

Project description:Soil prokaryotic communities under long-term fertilization

| PRJEB18484 | ENA

soil metagenome

Project description:Soil microbial communities under long-term fertilization

| PRJNA392976 | ENA

soil metagenome

Project description:Soil prokaryotic communities under long-term fertilization

| PRJNA392865 | ENA

Plant virus diversity in invasive weeds and crop plant varying between plant species and management systems

Project description:We conducted field surveys to detect the population density of the most important invasive weed species and their associated virus vectoring aphids in crops grown under high input (HIF) vs low-input (LIF) field conditions, with and without fertilizers and pesticides. The most frequent invasive weed species were Stenactis annua, Erigeron canadensis and Solidago canadensis. These species were hosts predominantly for the aphids Brachycaudus helichrysi and Aulacorthum solani in both management systems. The 13% higher coverage of S. annua under LIF conditions resulted in a 30% higher B. helichrysi abundance and ~85% higher A. solani abundance compared with HIF conditions. To reveal virus infection in crop plants and invasive weeds high-throughput sequencing of small RNAs were carried out. Bioinformatics analysis of the results detected the presence of 16 important plant viruses, but not resulting strikingly different pattern under LIF and HIF. This could suggest that invasive weeds serves as a virus reservoir both under low and high input management systems. The lake of any management increases virus vector aphids abundances, their presence has a great impact on the viromes of the crops.

2020-06-03 | GSE132755 | GEO

Project description:Cover crop field residue microbiome PEI Canada

| PRJNA781550 | ENA

Project description:Soil prokaryotic and fungal communities in mid-term cover crop and residue management trial

| PRJNA798719 | ENA