Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pseudoperonospora humuli

ABSTRACT: Pseudoperonospora humuli Raw sequence reads

PROVIDER: PRJNA545725 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9189975.fastq.gz	Fastqsanger.gz
	SRR9189976.fastq.gz	Fastqsanger.gz
	SRR9189977.fastq.gz	Fastqsanger.gz
	SRR9189978.fastq.gz	Fastqsanger.gz
	SRR9189979.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Pseudoperonospora humuli

Project description:Pseudoperonospora humuli overview

| PRJNA546428 | ENA

Pseudoperonospora

Project description:Pseudoperonospora cubensis and Pseudoperonospora humuli isolate sequences from GBS

| PRJNA297163 | ENA

Pseudoperonospora spp

Project description:Pseudoperonospora cubensis and Pseudoperonospora humuli Targeted loci environmental

| PRJNA675393 | ENA

Pseudoperonospora cubensis

Project description:Pseudoperonospora cubensis and Pseudoperonospora humuli isolate sequences from RNA-seq

| PRJNA297046 | ENA

Pseudoperonospora humuli

Project description:Pseudoperonospora humuli genome and transcriptome sequencing and assembly

| PRJNA354153 | ENA

Pseudoperonospora cubensis

Project description:Pseudoperonospora cubensis overview

| PRJNA80655 | ENA

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Pseudoperonospora

Project description:Using next generation sequencing to develop molecular diagnostics for Pseudoperonospora cubensis, the cucurbit downy mildew pathogen

| PRJNA293744 | ENA

Pseudoperonospora cubensis strain:MSU-1

Project description:Pseudoperonospora cubensis strain:MSU-1 Genome sequencing and assembly

| PRJNA80635 | ENA

Quantitative profiling of differentially expressed miRNAs in siCTL- and siOASL-transfected HUVECs

Project description:Purpose: The goal of this study is to compare endothelial small RNA transcriptome to identify the target of OASL under basal or stimulated conditions by utilizing miRNA-seq. Methods: Endothelial miRNA profilies of siCTL or siOASL transfected HUVECs were generated by illumina sequencing method, in duplicate. After sequencing, the raw sequence reads are filtered based on quality. The adapter sequences are also trimmed off the raw sequence reads. rRNA removed reads are sequentially aligned to reference genome (GRCh38) and miRNA prediction is performed by miRDeep2. Results: We identified known miRNA in species (miRDeep2) in the HUVECs transfected with siCTL or siOASL. The expression profile of mature miRNA is used to analyze differentially expressed miRNA(DE miRNA). Conclusions: Our study represents the first analysis of endothelial miRNA profiles affected by OASL knockdown with biologic replicates.

2022-09-06 | GSE186354 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data