Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-Seq of WT Staphylococcus aureus and dpurR grown to exponential and stationary phase

ABSTRACT: RNA-Seq of WT Staphylococcus aureus and dpurR grown to exponential and stationary phase

PROVIDER: PRJNA546264 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9201340_1.fastq.gz	Fastqsanger.gz
	SRR9201340_2.fastq.gz	Fastqsanger.gz
	SRR9201350_1.fastq.gz	Fastqsanger.gz
	SRR9201350_2.fastq.gz	Fastqsanger.gz
	SRR9201360_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 64

Similar Datasets

GAS M3 serotype, exponential versus stationary phase

Project description:MGAS315 is a wild type strain. RNA isolated in exponential phase and stationary phase were compared Keywords: Growth phase comparison

2007-06-28 | GSE5179 | GEO

stationary phase, Rhododoccus jostii RHA1 was grown in W minimal liquid medium with biphenyl

Project description:Transcriptomic analysis of the cells grown on biphenyl to stationary phase and those grown on biphenyl to mid-exponential phase

2010-06-10 | GSE22238 | GEO

Comparison of the exponential and stationary stages of Staphylococcus aureus (MRSA)

Project description:Proteomic analysis of Staphylococcus aureus strain NCTC8325 (MRSA) grown in rich medium. This strain produces 97% of persister in stationary phase. Exponential and stationary phase MRSA were compared to elucidate pathways that are modulated in the persister state compared to dividing cells.

2019-03-19 | MSV000083600 | MassIVE

Salmonella enterica serovar Typhimurium gene expression in exponential and stationary phase cultures

Project description:Transcriptional profiling of Salmonella Typhimurium strains SL1344 in exponential and stationary phase cultures

2017-03-29 | GSE97161 | GEO

RNA-seq of wild type Mycobacterium smegmatis mc2 155 (exponential and stationary phase) and Ms1 deletion strain (exponential and stationary phase)

Project description:RNA-seq of wild type Mycobacterium smegmatis mc2 155 (exponential and stationary phase) and Ms1 deletion strain (exponential and stationary phase)

| PRJEB27728 | ENA

Transcription profiling of yeast cells grown into stationary phase compared with exponential mid-log grown cells including a dye-swap

Project description:S. cerevisiae cells grown into stationary phase were compared with exponential mid-log grown cells including a dye-swap. External normalization controls were added in equal amounts to equivalent amounts of total RNA.

2003-04-01 | E-UMCU-4 | biostudies-arrayexpress

RNA-seq of wild type Mycobacterium smegmatis mc2 155 (exponential and stationary phase) and Ms1 deletion strain (exponential and stationary phase)

Project description:Ms1 RNA is ~300 nt sRNA that is highly expressed in stationary phase of growth and binds to the RNA polymerase (RNAP) core. We assume that by binding to RNAP, Ms1 could regulate transcription. Our aim was to reveal the most prominent changes in the transcriptome upon entry into stationary phase that might be dependent on Ms1. We performed RNA-seq data to characterize exponential (Ms_WT_exp) and stationary phase (Ms_WT_stat) transcriptome in M. smegmatis in wild type cells. In addition, we compared the transcriptome of the Ms1 knockout cells (Ms_KO_stat) with wild type cells in stationary phase and in exponential phase (Ms_KO_exp).

2018-11-12 | E-MTAB-7004 | biostudies-arrayexpress

Comparison of Bacillus subtilis wild type and cshA mutant at exponential versus stationary phase

Project description:Comparison of Bacillus subtilis wild type and cshA mutant at exponential versus stationary phase. Detailed description (other than provided below) of growth conditions, RNA preparation, cDNA synthesis and hybridization conditions can be found in the submitted paper. Bacillus subtilis 168 wild type and its cshA derivative strain were grown in CSE-Glu medium and cells were harvested at mid exponential (OD600 ~0.8) and early stationary phase (OD600 ~2.2-2.4). For both time points, 4 biological replicates were used and 2 were mixed after cDNA labeling, resulting 2 slides for both exponential and stationary phase. Dye swaps are included in both experiments.

2012-11-26 | E-GEOD-36877 | biostudies-arrayexpress

Comparison of Bacillus subtilis wild type and cshA mutant at exponential versus stationary phase

2012-11-26 | GSE36877 | GEO

E. coli transcriptome in stationary and mid-exponential phase

Project description:E. coli RNA was hybridized to tiling arrays to study the pattern of gene expression across the chromosome. 1 sample for stationary phase and 1 for mid-exponential phase

2016-03-22 | E-GEOD-77686 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data