Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Biodiversity assessment of coastal lagoon through eDNA metabarcoding

PROVIDER: PRJNA549294 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9313242.fastq.gz	Fastqsanger.gz
	SRR9313243.fastq.gz	Fastqsanger.gz
	SRR9313244.fastq.gz	Fastqsanger.gz
	SRR9313245.fastq.gz	Fastqsanger.gz
	SRR9313246.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

Project description:Coastal Lagoon monitoring through eDNA Metabarcoding

| PRJNA836411 | ENA

Towards functional profiling for eDNA based monitoring in coastal environments: a comparison of three approaches

Project description:Monitoring microbial communities can aid in understanding the state of these habitats. Environmental DNA (eDNA) techniques provide efficient and comprehensive monitoring by capturing broader diversity. Besides structural profiling, eDNA methods allow the study of functional profiles, encompassing the genes within the microbial community. In this study, three methodologies were compared for functional profiling of microbial communities in estuarine and coastal sites in the Bay of Biscay. The methodologies included inference from 16S metabarcoding data using Tax4Fun, GeoChip microarrays, and shotgun metagenomics.

2024-04-14 | E-MTAB-13075 | biostudies-arrayexpress

Padarn eDNA: annual time series with eDNA metabarcoding.

Project description:Biodiversity monitoring of a lake ecosystem through eDNA metabarcoding

| PRJEB13009 | ENA

mbrave workshop paper

Project description:Urban biodiversity assessment by aquatic eDNA sampling

| PRJEB37589 | ENA

Project description:Eukaryote biodiversity in supratidal microbialite pools: a foundational eDNA assessment

| PRJNA1187521 | ENA

Project description:eDNA 18S Aquatina Lagoon

| PRJNA880489 | ENA

Gene expression profiling of native mussels from Venice lagoon area

Project description:We examined gene expression profiling of native mussels that were sampled in early summer 2003 from sites of the Venice lagoon area known to be differently affected by chemical pollution: Sites 1 and 2 close to the industrial district of Marghera and Site 3 close to the Lido lagoon outlet. Site 4, a current mussel farm located offshore, has been chosen as source of reference targets for microarray hybridizations. We have limited the preliminary assessment to the digestive gland. Digestive gland total RNA of each Site was hybridized in competition with the offshore mussels (Site 4 - Reference) and the relative abundance of each gene was measured by directly comparing fluorescent signals for each probe. We carried out two separate hybridizations for each site of the Venice lagoon area.. Keywords = digestive gland Keywords = Venice lagoon Keywords = chemical pollution Keywords = native mussels Keywords = transcriptional profiling Keywords: ordered

2006-10-10 | GSE2184 | GEO

Project description:eDNA metabarcoding for biomonitoring of fish biodiversity after a dam construction

| PRJNA496021 | ENA

Project description:Optimization and application of environmental DNA (eDNA) tools for benthic biodiversity assessment

| PRJNA755994 | ENA

Project description:Fish eDNA metabarcoding

| PRJNA1049655 | ENA