Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rat gut metagenome

ABSTRACT: Alternative stable states in the intestinal ecosystem: proof of concept in a rat model and a perspective of therapeutic implications

PROVIDER: PRJNA549797 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12836400_1.fastq.gz	Fastqsanger.gz
	SRR12836400_2.fastq.gz	Fastqsanger.gz
	SRR12836500_1.fastq.gz	Fastqsanger.gz
	SRR12836500_2.fastq.gz	Fastqsanger.gz
	SRR12836600_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1256

Similar Datasets

Project description:Proof of concept of massively PCR barcoding

| PRJNA765590 | ENA

RNA Proximity Ligation to Resolve Intramolecular RNA Structures in situ

Project description:Proof-of-concept of a new method involving the limited digestion and subsequent ligation of intramolecular RNA structures in situ followed by deep sequencing Proof-of-concept of RPL in S. cerevisiae and H. sapiens tissue culture

2015-08-01 | E-GEOD-69472 | biostudies-arrayexpress

Sterilization of female rats by single-injection of estrogen: proof-of-concept for a nonsurgical alternative

Project description:Sterilization of female rats by single-injection of estrogen: proof-of-concept for a nonsurgical alternative

| PRJNA912242 | ENA

Single-cell sequencing of tumor ecosystems in papillary thyroid carcinoma

Project description:The tumor ecosystem of papillary thyroid carcinoma (PTC) is poorly characterized. Using single-cell RNA sequencing, we profiled transcriptomes of 158,577 cells from 11 patients’ paratumors, localized/advanced tumors, initially-treated/recurrent lymph nodes and radioactive iodine (RAI)-refractory distant metastases, covering comprehensive clinical courses of PTC.Our study illuminates a comprehensive landscape of PTC ecosystem that suggests potential prognostic and therapeutic implications. Our work not only adds dimensions to the biological underpinnings of PTC heterogeneity, but also provides a benchmark dataset for this malignancy.

2021-09-19 | GSE184362 | GEO

Project description:Genomic Selection in Forest Trees: Beyond Proof of Concept

| PRJNA719490 | ENA

Probing Plasmodium falciparum sexual differentiation at the single cell level

Project description:Malaria parasites go through major transitions during their complex life cycle, yet the underlying differentiation pathways remain obscure. Here we apply single cell transcriptomics to unravel events that initiate sexual development in preparation for transmission of the parasite from human to mosquito. This proof-of-concept study provides a template to capture transcriptional diversity in heterogeneous parasite populations, with major implications for our understanding of parasite biology and the ongoing malaria elimination campaign.

2017-03-11 | GSE96066 | GEO

Project description:GESTALTOMICS: A PROOF OF CONCEPT IN THE STUDY OF SCHIZOPHRENIA

| PRJEB36238 | ENA

Homo sapiens

Project description:Molecular phenotyping empowers drug discovery: a proof-of-concept study

| PRJNA354350 | ENA

mTMT: An alternative, non-isobaric, tandem mass tag allowing for precursor-based quantification

Project description:Stable isotope labeling of peptides is the basis for numerous mass spectrometry-based quantification strategies. Isobaric tagging and metabolic labeling, namely TMT and SILAC, are among the most widely used techniques for relative protein quantification. Here we report an alternative, precursor-based quantification method using non-isobaric TMT variants: TMT0 (TMTzero) and shTMT (super-heavy TMT). We term this strategy mTMT (mass difference tandem mass tagging), as these TMT variants differ by 11 mass units; yet, peptides labeled with these reagents co-elute, analogous to SILAC-labeled sample analysis. As proof-of-concept, we profiled the proteomes of two cell lines that are frequently used in neuroscience studies, SH-SY5Y and SVGp12, using mTMT and standard SILAC-labeling approaches. We show similar numbers of quantified proteins and peptides using each method with highly correlated fold changes between workflows. We conclude that mTMT is a suitable alternative for precursor-based protein quantification.

2019-09-16 | PXD014545 | Pride

Expression data of quaternary clones from rat lung CD117+ endothelial cells vs. non-clonal control endothelial cells

Project description:One current concept suggests that unchecked proliferation of clonally selected precursors of endothelial cells contribute to severe pulmonary arterial hypertension (pAH). We hypothesized that clonally selected ECs expressing the progenitor marker CD117 promote severe occlusive pulmonary hypertension (PH). We used microarrays to identify the steady state gene expression profile of quaternary clones derived from CD117+ rat lung ECs vs control ECs derived from rat lung CD117- cells.

2022-03-10 | GSE198151 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data