Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Comparison of different microbiome kits

PROVIDER: PRJNA550477 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9603210_1.fastq.gz	Fastqsanger.gz
	SRR9603210_2.fastq.gz	Fastqsanger.gz
	SRR9603211_1.fastq.gz	Fastqsanger.gz
	SRR9603211_2.fastq.gz	Fastqsanger.gz
	SRR9603212_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Nassar2022 - Microbome nucleic acid extraction kit NER model

Project description:Microbiome nucleic acid extraction kit model is a Named Entity Recognition (NER) model that identifies and annotates the name of the kits used in extracting microbiome nucleic acids in texts. This is the final model version used to annotate metagenomics publications in Europe PMC and enrich metagenomics studies in MGnify with kits metadata from literature. For more information, please refer to the following blogs: http://blog.europepmc.org/2020/11/europe-pmc-publications-metagenomics-annotations.html https://www.ebi.ac.uk/about/news/service-news/enriched-metadata-fields-mgnify-based-text-mining-associated-publications

2022-02-21 | MODEL2202170007 | BioModels

Project description:DNA isolation and sampling kits comparison

| PRJEB24411 | ENA

Project description:Comparison of DNA library preparation kits

| PRJNA769842 | ENA

An extension to: Systematic assessment of commercially available low-input miRNA library preparation kits

Project description:We compared the performance of two commercial kits (NEBNext and NEXTflex) for miRNA detection sensitivity, reliability, titration response and ability to detect differentially expressed miRNAs at different amounts of synthetic miRNAs. We observed differences in detection sensitivity between the kits, but none were able to detect the full repertoire of expected miRNAs. The reliability within the replicates of all kits was good, while larger differences were observed between the kits, although none could accurately quantify the majority of miRNAs. In a previous publication (https://doi.org/10.1080/15476286.2019.1667741; GEO accession number GSE133719) we accessed the performance of six additional miRNA library preparation kits.

2020-05-31 | GSE141658 | GEO

Evaluation of methyl-binding domain based enrichment approaches revisited

Project description:A comparison of methylMiner and MethylCap, two methylation enrichment kits

2014-12-20 | GSE64144 | GEO

Comparison of DNA extraction kits for MiSeq sequencing

Project description:Comparison of DNA extraction kits for MiSeq sequencing

| PRJEB10820 | ENA

Systematic assessment of commercially available low-input miRNA library preparation kits

Project description:We compared the performance of six commercial kits (QIAseq, SMARTer, CATS, CleanTag, srLp, TailorMix) capable of handling <100ng total RNA input for miRNA detection sensitivity, reliability, titration response and ability to detect differentially expressed miRNAs at different amounts of synthetic miRNAs. We observed differences in detection sensitivity between the kits, but none were able to detect the full repertoire of expected miRNAs. The reliability within the replicates of all kits was good, while larger differences were observed between the kits, although none could accurately quantify the majority of miRNAs.

2019-09-27 | GSE133719 | GEO

RNA expression profiles in bile

Project description:Compare small RNA expression in bile from normal vs. cancer patients and using different kits.

2022-12-30 | GSE221255 | GEO

Project description:Comparison of RNASeq Library Preparation Kits on FFPE Samples

| PRJNA660476 | ENA

Evaluation of RNA amplification and RNA-Seq library preparation protocols for spermatozoa RNA profiling

Project description:RNA-Seq technique was applied to investigate the effects of four cDNA amplification kits and two RNA-Seq library preparation kits to the deep sequencing results at different perspectives.

2015-05-09 | GSE57503 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data