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RNA-seq (H3K9ac and H3K4me3) analysis on Arabidopsis Col-0, hac1-1 (SALK_080380), and hac1-2 (SALK_136314)

ABSTRACT: RNA-seq (H3K9ac and H3K4me3) analysis on Arabidopsis Col-0, hac1-1 (SALK_080380), and hac1-2 (SALK_136314)

PROVIDER: PRJNA554140 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR9672860_1.fastq.gz	Fastqsanger.gz
	SRR9672860_2.fastq.gz	Fastqsanger.gz
	SRR9672852_1.fastq.gz	Fastqsanger.gz
	SRR9672852_2.fastq.gz	Fastqsanger.gz
	SRR9672853_1.fastq.gz	Fastqsanger.gz

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Project description:ABSTRACT: Inorganic arsenic is a carcinogen and its ingestion in foods such as rice presents a significant risk to human health. Plants chemically reduce arsenate to arsenite. Using genome-wide association (GWA) mapping of loci controlling natural variation in arsenic accumulation in Arabidopsis thaliana allowed us to identify the arsenate reductase required for this reduction, which we named High Arsenic Content1 (HAC1). Complementation verified the identity of HAC1, and expression in Escherichia coli lacking a functional arsenate reductase confirmed the arsenate reductase activity of HAC1. The HAC1 protein accumulates in the epidermis, the outer cell layer of the root, and also in the pericycle cells surrounding the central vascular tissue. Plants lacking HAC1 lose their ability to efflux arsenite from roots, leading to both increased transport of arsenic into the central vascular tissue and on into the shoot. HAC1 therefore functions to reduce arsenate to arsenite in the outer cell layer of the root, facilitating efflux of arsenic as arsenite back into the soil to limit its accumulation in the root and transport to the shoot. Arsenate reduction by HAC1 in the pericycle may play a role in limiting arsenic loading into the xylem. Loss of HAC1 encoded arsenic reduction leads to a significant increase in arsenic accumulation in shoots causing an increased sensitivity to arsenate toxicity. We also confirmed the previous observation that the ACR2 arsenate reductase in A. thaliana plays no detectable role in arsenic metabolism. Further, ACR2 does not interact epistatically with HAC1, since arsenic metabolism in the acr2 hac1 double mutant is disrupted in an identical manner to that described for the hac1 single mutant. Our identification of HAC1 and its associated natural variation provides an important new resource for the development of low arsenic containing food stuffs such as rice. Hybridizations from a set of Bulk Segregant analysis. We measured the elemental profile of 315 F2 plants from a cross between the high arsenic Arabidopsis thaliana accession Kr-0 and the the low arsenic accession Col-0, data available at www.ionomicshub.org <http://www.ionomicshub.org>. Leaves from the 59 highest and 61 lowest arsenic accumulating plants (calculated as a percentage of the Col-0 accumulation in the same growth tray) were pooled and the genomic DNA was extracted using Qiagen kits.

Dataset Information

RNA-seq (H3K9ac and H3K4me3) analysis on Arabidopsis Col-0, hac1-1 (SALK_080380), and hac1-2 (SALK_136314)

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