Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Activated sludge cultivated in differed micron-sized silica particles

ABSTRACT: Investigate the effects of silica particles on the anaerobic digestion performance and illustrate the influencing mechanism

PROVIDER: PRJNA554707 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9691015_1.fastq.gz	Fastqsanger.gz
	SRR9691015_2.fastq.gz	Fastqsanger.gz
	SRR9691016_1.fastq.gz	Fastqsanger.gz
	SRR9691016_2.fastq.gz	Fastqsanger.gz
	SRR9691017_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

activated sludge cultivated in differed micro-sized silica particles

Project description:Micron-sized silica particles in wastewater changed the occurrence of extracellular polymeric substances (EPS) of sludge and influenced the anaerobic degradability of protein and polysaccharides

| PRJNA577327 | ENA

activated sludge cultivated in differed sludge age

Project description:Investigate the effects of sludge age on the anaerobic digestion performance and illustrate the influencing mechanism

| PRJNA548226 | ENA

Transcription profiling of human lung epithelial cells (A549) treated with nano- and micro-sized silica and carbon particles to study toxic effects related to size and chemical origin

Project description:To screen for novel toxicological endpoints of nano-particles, we conducted an in vitro expression profiling study using human lung epithelial cells (A549). To identify effects that are specific to size or chemical origin, we compared gene expression of A549 cells treated with nano-sized and micro-sized particulates of two chemical origins (carbon and silica) to the control (untreated) cells.

2009-07-10 | E-TABM-679 | biostudies-arrayexpress

Nano-silica particles synergistically IgE-mediated mast cell activation

Project description:Nano-silica particles synergistically IgE-mediated mast cell activation

| PRJNA851610 | ENA

Macrophage response to silica nanoparticles

Project description:Using a macrophage cell line, we demonstrate the ability of amorphous silica particles to stimulate inflammatory protein secretion and induce cytotoxicity. Whole genome microarray analysis of early gene expression changes induced by 10nm and 500nm particles showed that the magnitude of change for the majority of genes correlated more tightly with particle surface area than either particle mass or number. Gene expression changes that were size-specific were also identified, however the overall biological processes represented by all gene expression changes were nearly identical, irrespective of particle diameter. Our results suggest that on an equivalent nominal surface area basis, common biological modes of action are expected for nano- and supranano-sized silica particles. Keywords: Dose-response study

2008-12-11 | GSE13005 | GEO

Pathways identified by toxicogenomics analysis reveal the size and dose independency of silica particles-induced toxicity in mice.

2011-08-01 | GSE30861 | GEO

Transcription profiling of mouse macrophage response to silica nanoparticles

2009-01-13 | E-GEOD-13005 | biostudies-arrayexpress

Pathways identified by toxicogenomics analysis reveal the size and dose independency of silica particles-induced toxicity in mice.

Project description:Understanding the interactions of nanostructures with biological systems is essential to nanotoxicological research. Using a microarray-based toxicogenomics approach at early stage, this study investigated the relationship between particle size and toxicity of silica particles (SP) with diameters of 30, 70, and 300 nm (SP30, SP70, and SP300) as well as the mechanism of injury in mice. Two experiments with SiO2 particles of different sizes were considered in mice. One was aimed to investigate the dose-response relationship of SP70 toxicity at a dose of 10, 20, or 40 mg/kg (experiment 1), and the other set to study the size-response relationship of SP-induced toxicity using SP30, SP70, or SP300 (experiment 2). In experiment 2, two dosages each of SP30, SP70, and SP300 were performed. One was 10 mg/kg at three particle sizes, and the other was toxic doses of the three particle sizes, i.e., 10 mg/kg for SP30, 40 mg/kg for SP70, and 200 mg/kg for SP300. The toxic doses of the three particle sizes of SP were decided on the basis of the results of histopathological examinations and serum biochemical analysis in our previous study.n = 5

2011-07-31 | E-GEOD-30861 | biostudies-arrayexpress

Effect of ultra-small silica nanoparticles (USSNs) on gene expression of peripheral blood mononuclear cells

Project description:Humans are exposed to high levels of amorphous silica particles daily, as they are used in food, cosmetic and pharmaceutical products, and recently in bioclinical applications. Here, peripheral blood mononuclear cells were exposed to USSNs (silicon) and their gene expression was assessed

2018-04-13 | GSE113088 | GEO

MicroRNA profiling from the silica-induced pulmonary fibrosis mouse model

Project description:microRNAs (miRNAs) play a critical biological role in a variety of pathophysiological processes by suppressing their target genes. However, little is known on the miRNAs expression profiles of lung tissues in silica-induced pulmonary fibrosis. To investigate miRNAs of interest in regulation of pulmonary fibrosis, total RNA was isolated from mice lungs collected at day 0, day 3, day 7, day 14, day 28 and day 56 after silica exposure. Then, miRNA microarray was performed with one mouse lung at each time point. miRNA microarray was performed with one mouse lung at day 0, day 3, day 7, day 14, day 28 and day 56 after silica exposure to investigate the miRNAs expression profiles of lung tissues in silica-induced pulmonary fibrosis.

2014-01-29 | GSE54463 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data