Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis [ATAC-seq]

ABSTRACT: Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis [ATAC-seq]

PROVIDER: PRJNA556585 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9831530_1.fastq.gz	Fastqsanger.gz
	SRR9831530_2.fastq.gz	Fastqsanger.gz
	SRR9831540_1.fastq.gz	Fastqsanger.gz
	SRR9831540_2.fastq.gz	Fastqsanger.gz
	SRR9831550_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 68

Similar Datasets

Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis

Project description:Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis

| PRJNA555578 | ENA

Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis [RNA-Seq]

Project description:Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis [RNA-Seq]

| PRJNA555478 | ENA

Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis [MNase-Seq]

Project description:Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis [MNase-Seq]

| PRJNA555580 | ENA

Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis [ATAC-seq]

Project description:During mammalian spermatogenesis, male germ cells undergo dramatic reorganization of chromatin, whereby 90-99% of histones are evicted and replaced by protamines. This reorganization prominently features histone acetylation to loosen chromatin structure. Given the potential role of retained histones in fertility and early embryonic development, the genomic location of retained nucleosomes is of great interest. However, the ultimate position and mechanisms underlying nucleosome eviction/retention are poorly understood, including several studies utilizing MNase-seq methodologies, but reporting remarkably dissimilar locations. Here, we utilized ATAC-seq to determine the location of retained nucleosomes in mouse sperm and found enrichment at promoters, but also retention at inter- and intragenic regions, and repetitive elements. We further investigated nucleosome eviction/retention by generating pre-meiotic, germ cell specific, conditional knockout mice for the histone acetyltransferase Gcn5, a key histone acetyltransferase. Gcn5cKO germ cells exhibited abnormal chromatin dynamics during spermiogenesis, including diminished nucleosome eviction leading to increased histone retention in sperm. These mice exhibited severe reproductive phenotypes: abnormal sperm production, sperm morphology, and ultimately, male infertility. Our findings demonstrate Gcn5 mediated histone acetylation promotes chromatin accessibility and nucleosome eviction in spermiogenesis, and that loss of histone acetylation leads to defects that disrupt male fertility and potentially, early embryogenesis.

2019-11-07 | GSE134825 | GEO

Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis [MNase-Seq]

2019-11-07 | GSE134560 | GEO

Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis [RNA-Seq]

2019-11-07 | GSE134521 | GEO

Gcn5-Mediated Histone Acetylation Governs Nucleosome Dynamics in Spermiogenesis.

Project description:During mammalian spermatogenesis, germ cell chromatin undergoes dramatic histone acetylation-mediated reorganization, whereby 90%-99% of histones are evicted. Given the potential role of retained histones in fertility and embryonic development, the genomic location of retained nucleosomes is of great interest. However, the ultimate position and mechanisms underlying nucleosome eviction or retention are poorly understood, including several studies utilizing micrococcal-nuclease sequencing (MNase-seq) methodologies reporting remarkably dissimilar locations. We utilized assay for transposase accessible chromatin sequencing (ATAC-seq) in mouse sperm and found nucleosome enrichment at promoters but also retention at inter- and intragenic regions and repetitive elements. We further generated germ-cell-specific, conditional knockout mice for the key histone acetyltransferase Gcn5, which resulted in abnormal chromatin dynamics leading to increased sperm histone retention and severe reproductive phenotypes. Our findings demonstrate that Gcn5-mediated histone acetylation promotes chromatin accessibility and nucleosome eviction in spermiogenesis and that loss of histone acetylation leads to defects that disrupt male fertility and potentially early embryogenesis.

| S-EPMC6917834 | biostudies-literature

Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis

Project description:This SuperSeries is composed of the SubSeries listed below.

2019-11-07 | GSE134561 | GEO

Genome-wide enrichment of Gcn5 and H3K18/H4K16 acetylation under physiological change of stress adaptation and stress recovery

Project description:The data provide information of Gcn5 enrichment, H3K18 and H4K16 acetylation level and Histone H3 density for 5 different physioloigcal conditions during stress adpatation and stress recovery (normal growth, during stress adaptation, after stress adaptation, under stress recovery, after stress recovery) in yeast. The purpose of the study is to understand how histone acetyltransferase HATs (Gcn5) apply it is function in gene regulation by changing global or local histone acetylation level under different physiological conditions. Gcn5 enrichment, H3K18 and H4K16 acetylation level and Histone H3 density are mearured and compared to input signal for 5 different physioloigcal conditions (normal growth, during stress adaptation, after stress adaptation, under stress recovery, after stress recovery). Replicates are used.

2013-07-22 | E-GEOD-36600 | biostudies-arrayexpress

Genome-wide enrichment of Gcn5 and H3K18/H4K16 acetylation under physiological change of stress adaptation and stress recovery

2013-07-22 | GSE36600 | GEO