Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Trichoderma viride strain:OSK-36

ABSTRACT: Trichoderma viride strain:OSK-36 Genome sequencing and assembly

PROVIDER: PRJNA556705 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR9837027.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Trichoderma viride

Project description:Trichoderma viride overview

| PRJNA544143 | ENA

Trichoderma viride

Project description:Trichoderma viride Transcriptome

| PRJNA657297 | ENA

Trichoderma viride strain:T8203

Project description:Trichoderma viride strain:T8203 Genome sequencing and assembly

| PRJNA1108205 | ENA

Trichoderma viride strain:Tv-1511

Project description:Trichoderma viride strain:Tv-1511 Genome sequencing and assembly

| PRJNA543939 | ENA

Trichoderma viride strain:LTR-2

Project description:Trichoderma viride LTR-2 Whole Genome sequencing

| PRJNA266090 | ENA

Comparative study of transcriptomes from four Trichoderma strains gene expression in early interaction with tomato plants

Project description:A self-designed Trichoderma high density oligonuclotide (HDO) microarray (Roche-NimbleGen, Inc., Madison, WI, USA) was constructed in a similar way than a previous Trichoderma HDO microarray (Samolski et al., 2009). The microarray was composed of 392,779 60-mer probes designed against 14,081 EST-derived transcripts (Trichochip-1) and the genomes of T. reesei (9,129 genes) and T. virens (11,643 genes). The Trichochip-1 ESTs were obtained from 28 cDNA libraries from eight different species (representing the biodiversity of this genus: T. harzianum, T. atroviride, T. asperellum, T. viride, T. longibrachiatum, T. virens, T. stromaticum and T. aggresivum), under a wide range of growth conditions, including biocontrol-related conditions and different nutritional situations (VizcaM-CM--no et al., 2006). This HDO microarray was used to analyze Trichoderma spp. transcriptomes after 20 h incubation in the presence of tomato plants. The Trichochip1 EST database was generated in the TrichoEST project funded by the EU (QLK3-CT-2002-02032). Eight samples were analyzed as follows: Strain T. reesei T6 grown in the presence or not of tomato plants, strain T. hamatum T7 grown in the presence or not of tomato plants, strain T. harzianum T34 grown in the presence or not of tomato plants and strain T. virens T87 grown in the presence or not of tomato plants. Three replicates for each samples were performed.

2012-02-27 | E-GEOD-29171 | biostudies-arrayexpress

Rhodovulum viride strain:JA756

Project description:Rhodovulum viride strain:JA756 Genome sequencing and assembly

| PRJNA367267 | ENA

Expression array for Trichoderma atroviride in mycoparasitic interaction with Rhizoctonia solani

2010-02-25 | GSE20516 | GEO

Rhodovulum viride

Project description:Rhodovulum viride overview

| PRJNA388827 | ENA

Expression array for Trichoderma atroviride in mycoparasitic interaction with Rhizoctonia solani

Project description:A self-designed Trichoderma high density oligonuclotide (HDO) microarray (Roche-NimbleGen, Inc., Madison, WI, USA) was constructed in a similar way than a previous Trichoderma HDO microarray (Samolski et al., 2009). The microarray was composed of 392,779 60-mer probes designed against 13,443 EST-derived transcripts (Trichochip-1) and the genomes of T. atroviride (11,100 genes) and T. virens (11,643 genes). The Trichochip-1 ESTs were obtained from 28 cDNA libraries from eight different species (representing the biodiversity of this genus: T. harzianum, T. atroviride, T. asperellum, T. viride, T. longibrachiatum, T. virens, T. stromaticum and T. aggresivum) under a wide range of growth conditions, including biocontrol-related conditions and different nutritional situations (VizcaÃno et al., 2006). The Trichochip1 EST database was generated in the TrichoEST project funded by the EU (QLK3-CT-2002-02032) T. atroviride P1 mycelium grown (approximately for 24h) at 25ÂºC on a cellophane sheet on PDA (Difco) plates before contact (at a distance of 5 mm) a R. solani colony grown under identical conditions in the same plate was compared with T. atroviride P1 mycelium after contact (5 mm) the above R. solani colony (mycoparasitic interaction). RNAs from both conditions were extracted and the corresponding cDNAs were use to hybridize by triplicate the Trichoderma HDO microarray.

2010-04-22 | E-GEOD-20516 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data