Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genome and transcriptome of chum salmon (Oncorhynchus keta)

PROVIDER: PRJNA556729 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	JABAHX01.dat.gz	Other
	JABAHX01.fasta.gz	Fasta.gz
	JABAHX01.master.dat	Other
	SRR11048433_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 131

Similar Datasets

Comparative transcriptomics of Atlantic Salmo salar, chum Onchorhynchus keta and pink salmon O. gorbuscha responding to salmon lice Lepeophtheirus salmonis infections

Project description:The present work characterizes the response of co-habited Atlantic (Salmo salar), chum (Oncorhynchus keta) and pink salmon (Oncorhynchus gorbuscha) to sea lice infections. Atlantic and pink salmon anterior kidney samples were profiled at three time points over nine days after the start of an experimental infection. Chum salmon anterior kidney was profiled at day six post infection only. All three species were also profiled at six days post exposure for skin responses of the pectoral fin, typically associated with lice infection.

2014-02-24 | GSE48337 | GEO

The olfactory transcriptome and progression of sexual maturation in homing chum salmon Oncorhynchus keta

Project description:This study aimed at providing insights into the hypothesized functional link between olfactory sensing of the spawning ground and final sexual maturation. We have therefore assessed the presence and expression levels of olfactory genes by RNA sequencing (RNAseq) of the olfactory rosettes in homing chum salmon Oncorhynchus keta Walbaum from the coastal sea to 75 km upstream the rivers at the pre-spawning ground. RNAseq revealed the expression of 75 known and 27 unknown salmonid olfactory genes of which 13 genes were differentially expressed between fish from the pre-spawning area and from the coastal area, suggesting an important role of these genes in homing. Olfactomedins and ependymin are candidates among the differentially expressed genes that may connect olfactory reception to the expression of sgnrh to regulate final maturation. Deep-sequencing transcriptome analysis of twelve chum salmon olfactory rosette RNA samples: three females and three males from the pre-spawning area and three females and three males from the coastal area.

2015-08-27 | E-GEOD-72390 | biostudies-arrayexpress

The olfactory transcriptome and progression of sexual maturation in homing chum salmon Oncorhynchus keta

2015-08-27 | GSE72390 | GEO

Oncorhynchus keta

Project description:The olfactory transcriptome and progression of sexual maturation in homing chum salmon Oncorhynchus keta

| PRJNA293937 | ENA

Oncorhynchus keta

Project description:Oncorhynchus keta Genome sequencing

| PRJNA267444 | ENA

Oncorhynchus keta

Project description:Oncorhynchus keta overview

| PRJNA160315 | ENA

Oncorhynchus keta

Project description:Oncorhynchus keta Transcriptome or Gene expression

| PRJNA480199 | ENA

Oncorhynchus keta

Project description:Oncorhynchus keta Transcriptome or Gene expression

| PRJNA17054 | ENA

Project description:full-length transcriptome of Oncorhynchus keta sequencing

| PRJNA775670 | ENA

fish gut metagenome

Project description:Predation on juvenile chum salmon Oncorhynchus keta by chub mackerel Scomber japonicus and spotted mackerel Scomber australasicus in Miyako Bay, Iwate prefecture, Japan

| PRJDB13194 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data