Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Polypodium hydriforme

ABSTRACT: Polypodium hydriforme Oxford Nanopore Minion

PROVIDER: PRJNA558922 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18072031_1.fastq.gz	Fastqsanger.gz
	SRR9902601_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Polypodium hydriforme

Project description:Polypodium hydriforme overview

| PRJNA262592 | ENA

Polypodium hydriforme

Project description:Polypodium hydriforme Genome sequencing

| PRJNA259515 | ENA

Polypodium hydriforme

Project description:Polypodium hydriforme Transcriptome or Gene expression

| PRJNA251648 | ENA

Oxford Nanopore MinION sequencing of multiplex PCR amplified, pathogen-spiked blood and plasma samples

Project description:To evaluate targeted MinION next generation sequencing as a diagnostic method for detection of pathogens in human blood and plasma, human blood or plasma samples were spiked with measured amounts of viruses, bacteria, protozoan parasites or tested pathogen-free as negative controls. Nucleic acid was extracted from samples and PCR amplification performed in multiplex primer pools with a procedure described in ArrayExpress experiment submission ID 18379. The PCR products were used for library preparation. The libraries sequenced on an Oxford Nanopore MinION. The passed reads aligned with a custom reference file to determine the identity of the pathogen in the sample.

2024-06-08 | E-MTAB-14011 | biostudies-arrayexpress

Single-nucleotide variant and marker frequency analysis of Sinorhizobium meliloti strains with rearranged genomic DNA

Project description:S. meliloti strains with a bi- and monopartite genome configuration were constructed by consecutive Cre/lox-mediated site-specific fusions of the secondary replicons. Beside the correct genomic arrangements, these strains and precursors were tested for variations in the nucleotide sequence. Futher, a marker fequency analysis was performed to test if replication is initiated at all origins and to determine the replication termination regions of the triple replicon fusion molecule. To gain the sequence data for these analyses, respective strains were applied to whole genome sequencing using an Illumina MiSeq-System and Oxford Nanopore (MinION) sequencing technology.

2024-09-30 | E-MTAB-11878 | biostudies-arrayexpress

ChIP-seq for Leu3 with addition of different levels of leucine, valine and isoleucine

Project description:In this experiment we wanted to see how the binding behavior of the S. Cerevisiae transcription factor Leu3, on of the main regulators of leucine biosynthesis, is affected by different availability of the branched chain amino acids. For this we grow the cells in shake flask under glucose limitation and treated them 2 hours before sampling. The cells were then cross-linked with formaldehyde and ChIP-seq was performed using the Oxford Nanopore MinIon.

2020-07-01 | E-MTAB-8820 | biostudies-arrayexpress

Polypodium glycyrrhiza

Project description:Polypodium glycyrrhiza plastome sequencing

| PRJNA266826 | ENA

Project description:Polypodium hydriforme genomic sequencing

| PRJNA957841 | ENA

Polypodium amorphum

Project description:Polypodium amorphum Raw sequence reads

| PRJNA341394 | ENA

Oxford nanopore sequencing data from the Arabidopsis thaliana accessions Ler-0, Cvi-0 and Tanz-1

Project description:Oxford nanopore sequencing data from the Arabidopsis thaliana accessions Ler-0, Cvi-0 and Tanz-1

2022-08-06 | E-MTAB-12009 | biostudies-arrayexpress