Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

A microRNAome sequencing of rice mesocotyl from darkness to light exposure

ABSTRACT: A microRNAome sequencing of rice mesocotyl from darkness to light exposure

PROVIDER: PRJNA561368 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10010317.fastq.gz	Fastqsanger.gz
	SRR10010318.fastq.gz	Fastqsanger.gz
	SRR10010319.fastq.gz	Fastqsanger.gz
	SRR10010320.fastq.gz	Fastqsanger.gz
	SRR10010321.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

A microRNAome sequencing of rice mesocotyl from darkness to light exposure

Project description:Light exposure quickly inhibits the elongation of mesocotyl of rice seedling. The two corresponding periods from darkness to loght (D_5d, L_1h) were selected to perform small RNA sequencing.

2021-08-21 | GSE136142 | GEO

A degradome sequencing of rice mesocotyl from darkness to light exposure

2021-08-21 | GSE136140 | GEO

A degradome sequencing of rice mesocotyl from darkness to light exposure

Project description:A degradome sequencing of rice mesocotyl from darkness to light exposure

| PRJNA561367 | ENA

The elongation of the rice mesocotyl from darkness to light: an 'omics perspective.

Project description:The elongation of the rice mesocotyl from darkness to light: an 'omics perspective.

| PRJNA562171 | ENA

Analysis of gene expression in wild type and the rel- strain of Synechococcus elongatus PCC7942 - RNA sequencing during exposure to darkness (cells grown in light/dark conditions)

Project description:We investigated the role of ppGpp in Synechococcus elongatus PCC7942 in light/dark conditions. We performed RNA-seq experiments using wild type and the rel- strain at dusk and during exposure to 12 h of darkness. We show that ppGpp is required for correct response to darkness.

2017-12-12 | GSE103704 | GEO

della-regulation in darkness versus light-DELLAs contribute to skotomorphogenesis

Project description:rs09-09_della-dark - della-regulation in darkness versus light - Identification of DELLA-dependent downstream targets in darkness - Aim was to determine downstream target of DELLA proteins involved in skotomorphogenesis. Wt, ga1-3, ga1-3_rga_gai_rgl1_rgl2_rgl3 global seeds were sterilized, sown on MS agar plates then put for stratification for 3 days at 4°C. Plates were placed in growth cabinet at 22°C for 5 days in darkness or in continous light. Keywords: gene knock out

2011-06-13 | GSE22681 | GEO

A dynamic transcriptome underling the light inhibition of mesocotyl elongation in rice seedling

Project description:The mesocotyl, a structure separating the grass seedling cotyledon from the coleoptile, exerts a major influence over the seedling’s ability to emerge. Its elongation is inhibited by light. A transcriptomic comparison between mesocotyl tissue which had developed in the dark and which had been exposed to light identified a large number of differentially transcribed genes (DTGs)

2021-08-21 | GSE136318 | GEO

kinetics of gene expression after light exposure in hub1-3 mutant compared to wild-type

Project description:au10-03_hub1 - kinetics of gene expression after light exposure in hub1-3 mutant compared to wild-type - Role of histone UbH2B in the regulation of gene expression in response to light - RNA from 5-day-old wild-type and hub1-3plants in 3 conditions were used for hybridization: 5 days of darkness, 5 days of darkness + 1 hour of light and 5 days of darkness + 6 hours of light. Keywords: genotype comparaison,time course

2011-05-20 | GSE21922 | GEO

della-regulation in darkness versus light-DELLAs contribute to skotomorphogenesis

Project description:rs09-09_della-dark - della-regulation in darkness versus light - Identification of DELLA-dependent downstream targets in darkness - Aim was to determine downstream target of DELLA proteins involved in skotomorphogenesis. Wt, ga1-3, ga1-3_rga_gai_rgl1_rgl2_rgl3 global seeds were sterilized, sown on MS agar plates then put for stratification for 3 days at 4Â°C. Plates were placed in growth cabinet at 22Â°C for 5 days in darkness or in continous light. Keywords: gene knock out 9 dye-swap - CATMA arrays

2011-06-12 | E-GEOD-22681 | biostudies-arrayexpress

Analysis of RNA polymerase stalling index in wild type and the rel- strain of Synechococcus elongatus PCC7942 - chromatin immunoprecipitation followed by sequencing during exposure to darkness (cells grown in light/dark conditions)

Project description:We investigated the role of ppGpp in Synechococcus elongatus PCC7942 in light/dark conditions. We performed ChIP-seq experiments using wild type and the rel- strain at dusk, during exposure to 12 h of darkness and at dawn. We show that the RNA polymerase pausing index is globally lower in the rel- strain.

2017-12-12 | GSE106824 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data