Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil metagenome

ABSTRACT: MetaComp - Nematodes

PROVIDER: PRJNA562119 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10020300_1.fastq.gz	Fastqsanger.gz
	SRR10020300_2.fastq.gz	Fastqsanger.gz
	SRR10020301_1.fastq.gz	Fastqsanger.gz
	SRR10020301_2.fastq.gz	Fastqsanger.gz
	SRR10020302_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 228

Similar Datasets

Soil metagenome

Project description:Metacomp - Nematodes

| PRJNA793632 | ENA

soil metagenome

Project description:18O SIP Nematodes

| PRJNA662476 | ENA

soil metagenome

Project description:Nematodes Targeted Locus (Loci)

| PRJNA238625 | ENA

soil metagenome

Project description:soil microbiome and nematodes

| PRJNA1056897 | ENA

soil metagenome

Project description:Nematodes from agricultural soils Metagenome

| PRJNA298966 | ENA

Soil nematodes

Project description:Soil nematodes

| PRJNA1089647 | ENA

soil metagenome

Project description:Deep amplicon sequencing of 18S rRNA genes of Nematodes.

| PRJDB10960 | ENA

soil metagenome

Project description:Comprehensive metabarcoding analysis for archaea, bacteria, fungi and nematodes

| PRJDB14524 | ENA

Metagenome-Assembled Genomes from Amazonian Soil Microbial Consortia.

Project description:Here, we report 17 metagenome-assembled genomes (MAGs) recovered from microbial consortia of forest and pasture soils in the Brazilian Eastern Amazon. The bacterial MAGs have the potential to act in important ecological processes, including carbohydrate degradation and sulfur and nitrogen cycling.

| S-EPMC9670897 | biostudies-literature

Prospecting for novel biocatalysts in a soil metagenome.

Project description:The metagenomes of complex microbial communities are rich sources of novel biocatalysts. We exploited the metagenome of a mixed microbial population for isolation of more than 15 different genes encoding novel biocatalysts by using a combined cultivation and direct cloning strategy. A 16S rRNA sequence analysis revealed the presence of hitherto uncultured microbes closely related to the genera Pseudomonas, Agrobacterium, Xanthomonas, Microbulbifer, and Janthinobacterium. Total genomic DNA from this bacterial community was used to construct cosmid DNA libraries, which were functionally searched for novel enzymes of biotechnological value. Our searches in combination with cosmid sequencing resulted in identification of four clones encoding 12 putative agarase genes, most of which were organized in clusters consisting of two or three genes. Interestingly, nine of these agarase genes probably originated from gene duplications. Furthermore, we identified by DNA sequencing several other biocatalyst-encoding genes, including genes encoding a putative stereoselective amidase (amiA), two cellulases (gnuB and uvs080), an alpha-amylase (amyA), a 1,4-alpha-glucan branching enzyme (amyB), and two pectate lyases (pelA and uvs119). Also, a conserved cluster of two lipase genes was identified, which was linked to genes encoding a type I secretion system. The novel gene aguB was overexpressed in Escherichia coli, and the enzyme activities were determined. Finally, we describe more than 162 kb of DNA sequence that provides a strong platform for further characterization of this microbial consortium.

| S-EPMC201203 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data