Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pyxicephalus adspersus

ABSTRACT: Pyxicephalus adspersus overview

PROVIDER: PRJNA563492 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	DYDO01.dat.gz	Other
	DYDO01.fasta.gz	Fasta.gz
	DYDO01.master.dat	Other
	PZQJ01.dat.gz	Other

Items per page:

1 - 5 of 48

Similar Datasets

Pyxicephalus adspersus strain:breed

Project description:Pyxicephalus adspersus Transcriptome

| PRJDB7457 | ENA

Pyxicephalus adspersus isolate:1538

Project description:Pyxicephalus adspersus genome reassembly

| PRJNA578592 | ENA

Pyxicephalus adspersus isolate:1538 | breed:African Bullfrog

Project description:Pyxicephalus adspersus isolate:1538 | breed:African Bullfrog Genome sequencing and assembly

| PRJNA439445 | ENA

Tautogolabrus adspersus

Project description:Tautogolabrus adspersus overview

| PRJNA775794 | ENA

Paralichthys adspersus

Project description:Paralichthys adspersus overview

| PRJNA755365 | ENA

Pternistis adspersus strain:NA

Project description:Pternistis adspersus

| PRJNA965729 | ENA

Dataset for <i>de novo</i> transcriptome assembly of the African bullfrog <i>Pyxicephalus adspersus</i>.

Project description:In this article, we report the first de novo transcriptome assembly of the African bullfrog Pyxicephalus adspersus. In this data, 75,320,390 raw reads were acquired from African bullfrog mRNA using Illumina paired-end sequencing platform. De novo assembly resulted in a total of 136,958 unigenes. In the obtained unigenes, 30,039 open reading frames (ORFs) were detected. This dataset provides basic information for molecular level analysis of this species, which undergoes a state of dormancy under dry conditions at ordinary temperatures called estivation.

| S-EPMC7082503 | biostudies-literature

Tautogolabrus adspersus isolate:fTauAds1

Project description:Tautogolabrus adspersus (cunner) genome, fTauAds1, alternate haplotype

| PRJNA774879 | ENA

Tautogolabrus adspersus isolate:fTauAds1

Project description:Tautogolabrus adspersus (cunner) genome, fTauAds1, primary haplotype

| PRJNA774878 | ENA

The complete mitochondrial genome of Pyxicephalus adspersus: high gene rearrangement and phylogenetics of one of the world's largest frogs.

Project description:The family Pyxicephalidae including two subfamilies (Cacosterninae and Pyxicephalinae) is an ecologically important group of frogs distributed in sub-Saharan Africa. However, its phylogenetic position among the Anura has remained uncertain. The present study determined the complete mitochondrial genome sequence of Pyxicephalus adspersus, the first representative mitochondrial genome from the Pyxicephalinae, and reconstructed the phylogenetic relationships within Ranoidae using 10 mitochondrial protein-coding genes of 59 frog species. The P. adspersus mitochondrial genome showed major gene rearrangement and an exceptionally long length that is not shared with other Ranoidae species. The genome is 24,317 bp in length, and contains 15 protein-coding genes (including extra COX3 and Cyt b genes), four rRNA genes (including extra 12S rRNA and 16S rRNA genes), 29 tRNA genes (including extra tRNALeu (UAG), tRNALeu (UUR), tRNAThr , tRNAPro , tRNAPhe , tRNAVal , tRNAGln genes) and two control regions (CRs). The Dimer-Mitogenome and Tandem duplication and random loss models were used to explain these gene arrangements. Finally, both Bayesian inference and maximum likelihood analyses supported the conclusion that Pyxicephalidae was monophyletic and that Pyxicephalidae was the sister clade of (Petropedetidae + Ptychadenidae).

| S-EPMC6709665 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data