Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Israel ST410 NDM E. coli multicenter outbreak

PROVIDER: PRJNA574233 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10188428_1.fastq.gz	Fastqsanger.gz
	SRR10188428_2.fastq.gz	Fastqsanger.gz
	SRR10188429_1.fastq.gz	Fastqsanger.gz
	SRR10188429_2.fastq.gz	Fastqsanger.gz
	SRR10188430_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 112

Similar Datasets

Comparative genomic profiling and gene expression of Escherichia coli O103:H25 Oslo 2006 outbreak strain

2010-09-01 | GSE9418 | GEO

Description of ST410 Escherichia coli

Project description:Description of ST410 Escherichia coli

| PRJEB9568 | ENA

RNA-seq of Escherichia coli K-12 MG1655 and Stx2 phage lysogens

Project description:Here, we investigated the impact of Stx2 phage carriage on Escherichia coli (E. coli) K-12 MG1655 host gene expression. Using quantitative RNA-seq analysis, we compared the transcriptome of naïve MG1655 and the lysogens carrying the Stx2 phage of the 2011 E. coli O104:H4 outbreak strain or of the E. coli O157:H7 strain PA8, which share high degree of sequence similarity.

2019-06-17 | GSE126710 | GEO

Comparative genomic profiling and gene expression of Escherichia coli O103:H25 Oslo 2006 outbreak strain

Project description:A food-borne outbreak of haemorrhagic colitis (HC) and HUS caused by E. coli O103:H25 occurred in Norway, 2006. The outbreak included 17 registered cases, of which 10 developed HUS. The aim of this study was to characterize two E. coli O103:H25 isolates from this outbreak. Only one of the isolates carry the stx2 gene (by PCR). Since they have the same typing profile by typing method MLVA, we expect the isolates to have identical gene content except from an Stx2-encoding phage. Therefore, we further investigate whether the Stx2-encoding phage has any impact on the gene expression. Keywords: mixed, gene expression, comparative genomic hybridization Triplicate samples of mRNA from a test strain O157:H7 EDL933 and two outbreak strains - one Stx positive and one stx negative were co-hybridized with genomic DNA from the same strain. Triplicate samples of the Stx positive strain grown at acidic conditions was also co-hybridized with genomic DNA from the Stx positive strain. Genomic DNA for each strain is technical replicates only.

2010-09-01 | E-GEOD-9418 | biostudies-arrayexpress

Project description:Escherichia coli clinical isolates ST410 co-producers of NDM-5 and OXA-181 and stability-derived strains.

| PRJNA577622 | ENA

Escherichia coli

Project description:NDM Escherichia coli

| PRJNA259763 | ENA

Escherichia coli O157:H7 Isolates Related to the 2006 Spinach-associated Outbreak Exhibit Distinct Transcriptional Profiles

Project description:We compared the transcriptional profiles of 12 E. coli O157:H7 isolates grown to stationary phase in LB broth. These isolates possess the same two enzyme PFGE profile and are related temporally or geographically to the above outbreak. These E. coli O157:H7 isolates included three clinical isolates, five isolates from separate bags of spinach, and single isolates from pasture soil, river water, cow feces, and a feral pig.

2011-11-01 | GSE33131 | GEO

Escherichia coli

Project description:NDM-producing Escherichia coli

| PRJNA270222 | ENA

Escherichia coli strain:ST410 | isolate:Es_ST410_NW1_NDM_09_2017

Project description:Escherichia coli strain:ST410 | isolate:Es_ST410_NW1_NDM_09_2017 Genome sequencing

| PRJNA482002 | ENA

Project description:Whole genome sequence of an Escherichia coli ST410

| PRJNA541767 | ENA