Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Thrushes

ABSTRACT: Global Thrush Phylogeny

PROVIDER: PRJNA574741 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10240700_1.fastq.gz	Fastqsanger.gz
	SRR10240700_2.fastq.gz	Fastqsanger.gz
	SRR10240701_1.fastq.gz	Fastqsanger.gz
	SRR10240701_2.fastq.gz	Fastqsanger.gz
	SRR10240702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 230

Similar Datasets

Global phylogeny of enterotoxigenic Escherichia coli collection

Project description:Global phylogeny of enterotoxigenic Escherichia coli collection

| PRJEB2581 | ENA

Porphyromonas gingivalis comparative genomic hybridization

Project description:Genotyping studies suggest that there is genetic variability among P. gingivalis strains, however the extent of variability remains unclear, and the regions of variability have only partially been identified. We previously used heteroduplex analysis of the ribosomal operon intergenic spacer region (ISR) to type P. gingivalis strains in several diverse populations, identifying 6 predominant heteroduplex types and many minor ones. In addition we used ISR sequence analysis to determine the relatedness of P. gingivalis strains to one another, and demonstrated a link between ISR sequence phylogeny and the disease-associated phenotype of P. gingivalis strains. The availability of whole genome microarrays based on the genomic sequence of strain W83 has allowed a more comprehensive analysis of P. gingivalis strain variability, using the entire genome. The objectives of this study were to define the phylogeny of P. gingivalis strains using the entire genome, to compare the phylogeny based on genome content to the phylogeny based on a single locus (ISR), and to identify genes that are associated with the strongly disease-associated strain W83 that could be important for virulence. Keywords: Comparative genomic hybridization

2008-10-09 | GSE13128 | GEO

Turdus thrushes

Project description:Phylogenomics of Island Thrush

| PRJNA747885 | ENA

SNP genotyping analyses for the Chinese indigenous pig breeds and commercial pig breeds

2013-05-09 | GSE46733 | GEO

Project description:Swainson's thrush hybrid zone sequencing

| PRJNA1024534 | ENA

Project description:Swainson's thrush hybrid zone WGS

| PRJNA1157204 | ENA

Turdus thrushes

Project description:Evolutionary relationships of Sulawesi Thrush

| PRJNA747882 | ENA

Catharus guttatus

Project description:Catharus guttatus (hermit thrush), bCatGut1

| PRJNA1187649 | ENA

SNP genotyping analyses for the Chinese indigenous pig breeds and commercial pig breeds

Project description:Genome-wide SNP genotyping array can genotyped SNP highthroughly. It can be used in many aspects, such as phylogeny relationships, genome-wide association studies, copy number identification. 9 Chinese indigenous pig, 4 commercial pigs and 1 wild pig were genotyped by PorcineSNP60 array (Illumina) for exploring the phylogeny relationships among them.

2013-05-09 | E-GEOD-46733 | biostudies-arrayexpress

Project description:Catharus ustulatus (Swainson's thrush) genome, bCatUst1

| PRJNA562193 | ENA