Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Soil biodiversity in temperate deserts

PROVIDER: PRJNA575950 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10238409_1.fastq.gz	Fastqsanger.gz
	SRR10238409_2.fastq.gz	Fastqsanger.gz
	SRR10238410_1.fastq.gz	Fastqsanger.gz
	SRR10238410_2.fastq.gz	Fastqsanger.gz
	SRR10238411_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 180

Similar Datasets

Project description:Soil biodiversity in temperate deserts

| PRJNA576095 | ENA

Monthly dynamics of microbial functional diversity and composition in a tall-grass prairie, 2012

Project description:We carried out an in-depth analysis of the monthly variations of a temperate grassland ecosystem to examine a range of biotic and abiotic factors that underpin soil respiration changes in response to warming.

2022-02-10 | GSE195490 | GEO

The microbial taxonomic and functional compositions in three broadleaved forests in temperate and subtropical zones

Project description:Global warming has shifted climate zones poleward or upward. However, understanding the responses and mechanism of microbial community structure and functions relevant to natural climate zone succession is challenged by the high complexity of microbial communities. Here, we examined soil microbial community in three broadleaved forests located in the Wulu Mountain (WLM, temperate climate), Funiu Mountain (FNM, at the border of temperate and subtropical climate zones), or Shennongjia Mountain (SNJ, subtropical climate).Soils were characterized for geochemistry, Illumina sequencing was used to determine microbial taxonomic communities and GeoChips 5.0 were used to determine microbial functional genes.

2017-01-10 | GSE92233 | GEO

soil metagenome

Project description:Multi-gene DNA meta-barcoding of soil biodiversity on a temperate forested island (Hauturu)

| PRJNA393363 | ENA

Unbiased Capture Hi-C reveals the potential targets of breast cancer susceptibility loci

Project description:Genome-wide association studies have identified over 70 common variants that are associated with breast cancer risk. Most of these variants map to non-protein-coding regions; several map to gene deserts, regions of several hundred kb lacking protein-coding genes. We hypothesized that gene deserts harbour long-range regulatory elements that can physically interact with target genes to influence their expression. To test this, we developed Capture Hi-C (CHi-C), which by incorporating a sequence capture step into a Hi-C protocol, allows high-resolution analysis of targeted regions of the genome. We used CHi-C to investigate long-range interactions at three breast cancer gene deserts mapping to 2q35, 8q24.21 and 9q31.2. We identified interaction peaks between putative regulatory elements ("bait fragments") within the captured regions and "targets" that included both protein-coding genes and long non-coding (lnc)RNAs, over distances of 6.6 kb to 2.6 Mb. Target protein-coding genes were IGFBP5, KLF4, NSMCE2 and MYC; target lncRNAs included DIRC3, PVT1 and CCDC26. For two gene deserts we were able to define a set of SNPs that were correlated with the published risk variant and that clustered within the bait end of an interaction peak. Preliminary functional analyses implicate one SNP (rs12613955; 2q35) as a potentially functional variant. Capture Hi-C was carried out in BT483, SUM44, and GM06990 cell lines to investigate breast cancer risk loci 2q35, 8q24.21 and 9q31.2.

2014-08-04 | E-GEOD-55634 | biostudies-arrayexpress

Project description:Soil Invertebrates biodiversity

| PRJNA551592 | ENA

soil metagenome

Project description:Temperate forest soil Metagenome

| PRJNA210332 | ENA

soil metagenome

Project description:Soil microbial community from deserts and semideserts samples

| PRJDB7582 | ENA

Unbiased Capture Hi-C reveals the potential targets of breast cancer susceptibility loci

2014-08-04 | GSE55634 | GEO

Project description:Temperate Connecticut Biological Soil Crusts