Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Colletotrichum gloeosporioides strain:Lc1

ABSTRACT: Colletotrichum gloeosporioides strain:Lc1 Genome sequencing and assembly

PROVIDER: PRJNA577812 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR10828531_1.fastq.gz	Fastqsanger.gz
	SRR10828531_2.fastq.gz	Fastqsanger.gz
	SRR10828079_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Colletotrichum gloeosporioides strain:ES026

Project description:Colletotrichum gloeosporioides strain:ES026 Genome sequencing and assembly

| PRJNA488958 | ENA

Colletotrichum gloeosporioides strain:CgDa01

Project description:Colletotrichum gloeosporioides strain:CgDa01 Genome sequencing and assembly

| PRJNA792738 | ENA

Colletotrichum gloeosporioides strain:Cg01

Project description:Colletotrichum gloeosporioides strain:Cg01 Genome sequencing and assembly

| PRJNA484086 | ENA

Colletotrichum gloeosporioides strain:NWUHS001

Project description:Colletotrichum gloeosporioides strain:NWUHS001 Genome sequencing and assembly

| PRJNA1028833 | ENA

Colletotrichum gloeosporioides strain:TYU

Project description:Colletotrichum gloeosporioides strain:TYU Genome sequencing and assembly

| PRJNA395616 | ENA

Colletotrichum gloeosporioides

Project description:Colletotrichum gloeosporioides Transcriptome

| PRJNA1035817 | ENA

Colletotrichum gloeosporioides strain:WL11

Project description:Colletotrichum gloeosporioides strain:WL11 Genome sequencing

| PRJNA849159 | ENA

Colletotrichum gloeosporioides strain:CFCC80308

Project description:Colletotrichum gloeosporioides strain:CFCC80308 Genome sequencing

| PRJNA961031 | ENA

Colletotrichum gloeosporioides

Project description:Colletotrichum gloeosporioides SMCG1#C genome

| PRJNA1008860 | ENA

Global transcriptome analysis of the pH regulator pacC in Colletotrichum gloeosporioides

Project description:Colletotrichum gloeosporioides, a widely distributed economically important agent in postharvest fruit disease thrives by massive secretion of ammonia to alkalize its environment and activate its pathogenicity genes. We sequenced the C. gloeosporioides transcriptomes of WT and a M-bM-^HM-^FpacC mutant, a major gene regulator under changing pH, under pH 7.0 in order to examine pacC regulation. Transcriptome analysis of the M-bM-^HM-^FpacC strain showed that 468 and 458 genes were up or down regulated, respectively. Both the up and down regulated genes were clustered into similar functions including: transporters to maintain cellular homeostasis, cell wall degrading enzymes to optimize pathogenicity and GATA-like transcription factors. Suggesting that activation of pacC under alkaline condition regulates genes expression to fit their optimal PKa. The transcript level predictions were verified by growth in different pH and fruit infection. Further analyses showed pacC binding sites were over-represented in the promoters of the pacC up-regulated genes but not in the promoters of the down-regulated genes, where instead, GATA-like binding sites were prominent. Evolutionary conservation of pacC control was sought by examining the gene orthologs in 5 fungal genomes whose members display contrasting alkaline or acidifying pathogenicity strategies. The results showed that irrespective of pathogen colonization strategy, only orthologs of up-regulated genes showed over-representation of pacC binding sites. Significantly, the down regulated orthologs revealed cross-genome over-representation of GATA transcription factor binding sites. Thus, pacC is a phylogenetically conserved fungal mechanism exerting dual pH control for maintaining homeostasis and pathogenicity in changing environments. Examination of C. gloeosporioides WT and a M-bM-^HM-^FpacC mutant grown under pH 7.0

2013-11-21 | E-GEOD-41844 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data