Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ammonia-oxidizing archaea

ABSTRACT: ammonia-oxidizing archaea Raw sequence reads

PROVIDER: PRJNA577974 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10331044.fastq.gz	Fastqsanger.gz
	SRR10331045.fastq.gz	Fastqsanger.gz
	SRR10331046.fastq.gz	Fastqsanger.gz
	SRR10331047.fastq.gz	Fastqsanger.gz
	SRR10331048.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 13

Similar Datasets

ammonia-oxidizing archaea

Project description:ammonia-oxidizing archaea Raw sequence reads

| PRJNA793074 | ENA

Ammonia oxidizing archaea

Project description:Ammonia oxidizing archaea Raw sequence reads

| PRJNA866309 | ENA

soil ammonia-oxidizing archaea

Project description:soil ammonia-oxidizing archaea Raw sequence reads

| PRJNA951904 | ENA

ammonia-oxidizing archaea

Project description:ammonia-oxidizing archaea Genome sequencing

| PRJNA609401 | ENA

Ammonia-oxidizing archaea in forest soil

Project description:Ammonia-oxidizing archaea in forest soil

| PRJEB45739 | ENA

A chromatin-driven mechanism of transcription in ammonia-oxidizing archaea under environmental stress [MNase-seq]

Project description:Ammonia-oxidizing archaea (AOA) play a significant role in global nitrogen and carbon cycling. AOA can survive under fluctuating environmental conditions by modulating gene expression. Little is known about how AOA regulate gene expression to adapt environmental stress. Here, we report a chromatin-driven mechanism of transcription in Nitrososphaera Viennensis (EN76) to adapt to temperature stress. Using computational and biochemical assays, we found EN76 contains an archaeasome structure. We found that several residues, including G20, K57, and T58 of histone, are important to form archaea chromatin structures. In vitro transcription assays revealed that AOA chromatin efficiently controls gene expression, similar to eukaryote chromatin. Furthermore, we identified AOA histone acetylation, which activates gene expression. Moreover, by integrating chromatin-based gene expression analyses, we revealed that AOA differentially regulate gene expression in response to temperature stress by altering archaeasome occupancy. Our study provides unprecedented documentation that AOA fine-tunes gene expression through a chromatin-driven epigenetic mechanism.

2024-06-30 | GSE249031 | GEO

Ammonia oxidizing bacteria

Project description:Ammonia oxidizing bacteria Raw sequence reads

| PRJNA907133 | ENA

ammonia-oxidizing bacteria

Project description:ammonia-oxidizing bacteria Raw sequence reads

| PRJNA793076 | ENA

A chromatin-driven mechanism of transcription in ammonia-oxidizing archaea under environmental stress [RNA-seq]

2024-06-30 | GSE249032 | GEO

Evaluation of Edaphic Microbial Ammonium Oxidizing Communities during a Yellow Potato Cycle Culture

Project description:This study evaluated the ammonium oxidizing communities (COA) associated with a potato crop (Solanum phureja) rhizosphere soil in the savannah of Bogotá (Colombia) by examining the presence and abundance of amoA enzyme genes and transcripts by qPCR and next-generation sequence analysis. amoA gene abundance could not be quantified by qPCR due to problems inherent in the primers; however, the melting curve analysis detected increased fluorescence for Bacterial communities but not for Archaeal communities. Transcriptome analysis by next-generation sequencing revealed that the majority of reads mapped to ammonium-oxidizing Archaea, suggesting that this activity is primarily governed by the microbial group of the Crenarchaeota phylum. In contrast,a lower number of reads mapped to ammonia-oxidizing bacteria.

2018-08-06 | GSE71824 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data