Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Camelina microcarpa

ABSTRACT: Camelina microcarpa overview

PROVIDER: PRJNA582160 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10873740_1.fastq.gz	Fastqsanger.gz
	SRR10873740_2.fastq.gz	Fastqsanger.gz
	SRR11024357_1.fastq.gz	Fastqsanger.gz
	SRR11024357_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Camelina microcarpa cultivar:MTKK1

Project description:Camelina microcarpa MTKK1 Resequencing

| PRJNA581025 | ENA

Macleaya microcarpa

Project description:Macleaya microcarpa overview

| PRJNA84143 | ENA

Ficus microcarpa

Project description:Ficus microcarpa overview

| PRJNA709877 | ENA

Camelina microcarpa subsp. pilosa

Project description:Camelina sativa var. pilosa overview

| PRJNA573980 | ENA

Juglans microcarpa x Juglans regia

Project description:Juglans microcarpa x Juglans regia overview

| PRJNA530815 | ENA

Macleaya microcarpa

Project description:Macleaya microcarpa Transcriptome or Gene expression

| PRJNA80485 | ENA

Atlantic salmon (Salmo salar) liver transcriptome response to diets containing camelina products

Project description:This study was performed to investigate assess the impacts of CO and/or CM containing diets on Atlantic salmon hepatic gene expression in order to identify candidate molecular biomarkers of responses to camelina-containing diets. Atlantic salmon were fed diets with complete or partial replacement of FO and/or FM with camelina oil (CO) and/or camelina meal (CM) in a 16-week trial (Control diet: FO; Test diet: 100% FO replacement with CO, with solvent-extracted FM and inclusion of 10% CM (100COSEFM10CM). A 44K microarray experiment identified liver transcripts that responded to 100COSEFM10CM (associated with reduced growth) compared to FO controls at week 16.

2015-05-12 | GSE56784 | GEO

Exploring Camelina sativa lipid metabolism regulation by combining gene co-expression and DNA affinity purification analyses

Project description:Camelina is an annual oilseed plant that is gaining momentum as a biofuel winter cover crop. Understanding gene regulatory networks (GRNs) is essential to deciphering plant metabolic pathways, including lipid metabolism. Here, we take advantage of a growing collection of gene expression datasets to predict transcription factors (TFs) associated with the control of Camelina lipid metabolism. Also, we performed RNA-seq assays of Camelina's seed at 5, 8, and 11 days post-anthesis (DPA) to improve the transcriptomic resolution of the early stages of the Camelina seed development. We identified ~350 TFs highly co-expressed with lipid-related genes (LRGs). After prioritizing the top 22 TFs for further validation, we identified DNA-binding sites and predicted target genes for 16/22 TF using DNA affinity purification sequencing (DAP-seq). Enrichment analyses supported the co-expression prediction for most TF candidates, and the comparison to Arabidopsis revealed some common themes and aspects unique to Camelina. Altogether, the integration of co-expression data and DNA-binding assays permitted us to generate a high-confident and shortlist of Camelina TFs involved in controlling lipid metabolism during seed development.

2022-01-13 | GSE184283 | GEO

Camelina microcarpa subsp. pilosa cultivar:CAM274

Project description:Camelina pilosa CAM274 Resequencing

| PRJNA584078 | ENA

Camelina microcarpa subsp. pilosa cultivar:STAMM02X10B

Project description:Camelina pilosa STAMM02X10B Resequencing

| PRJNA569425 | ENA