Project description:Transcript profiles of Serpula lacrymans grown on different substrates were analyzed. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, department of energy) Serpula lacrymans genome sequence version 1. One aim of this study was to verify the expression of the automatically annotated gene models under various conditions. Another goal was to compare gene expression profiles from Serpula lacrymans grown on liquid MMN medium and on wood.
Project description:Transcript profiles of Serpula lacrymans grown on different substrates were analyzed. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, department of energy) Serpula lacrymans genome sequence version 1. One aim of this study was to verify the expression of the automatically annotated gene models under various conditions. Another goal was to compare gene expression profiles from Serpula lacrymans grown on liquid MMN medium and on wood. We performed 9 hybridizations (NimbleGen) with samples derived fromfrom Serpula lacrymans grown on liquid MMN medium and on wood.
Project description:This study characterizes the transcriptomic alterations of Serpula lacrymans in contact with tree roots compared to the transcriptome of free-living mycelium. We performed 6 hybridizations (NimbleGen) with samples derived from Picea sylvestris root tips inoculated with Serpula lacrymans (three biological replicates). These samples were compared to free-living mycelium from Serpula lacrymans (three biological replicates). All samples were labeled with Cy3.
Project description:This study characterizes the transcriptomic alterations of Serpula lacrymans in contact with tree roots compared to the transcriptome of free-living mycelium.
