Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Human metagenome

ABSTRACT: Mycobiome characterization in Lung Cancer

PROVIDER: PRJNA586768 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10390631_1.fastq.gz	Fastqsanger.gz
	SRR10390631_2.fastq.gz	Fastqsanger.gz
	SRR10390632_1.fastq.gz	Fastqsanger.gz
	SRR10390632_2.fastq.gz	Fastqsanger.gz
	SRR10390633_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 100

Similar Datasets

human metagenome

Project description:Microbiota characterization in Lung Cancer

| PRJNA586753 | ENA

Proteogenomic characterization analysis of human large cell lung cancer

Project description:Current clinical therapy of non-small cell lung cancer depends on histo-pathological classification. This approach poorly predicts clinical outcome for individual patients. Proteogenomic characterization analysis holds promise to improve clinical stratification, thus paving the way for individualized therapy. We investigated proteogenomic characterization and performed comprehensive integrative genomic analysis of human large cell lung cancer. Here we analyzed proteomes of 29 paired normal lung tissues and large cell lung cancer, identified significantly deregulated proteins associated with large cell lung cancer.

2019-01-16 | PXD012393 |

human gut metagenome

Project description:Gut Mycobiome of Breast Cancer Patients within Pahang, Malaysia

| PRJNA914487 | ENA

human gut metagenome

Project description:Characterization of the human gut mycobiome: vegetarian diet as a case study

| PRJNA268649 | ENA

human lung metagenome

Project description:Human respiratory tract mycobiome and alterations in HIV infection and lung disease Targeted Locus (Loci)

| PRJNA241408 | ENA

human metagenome

Project description:Human lung cancer metagenomic raw sequence reads

| PRJNA727667 | ENA

human metagenome

Project description:Mycobiome of oral squamous cell carcinoma

| PRJNA375780 | ENA

human metagenome

Project description:The mycobiome of human gallbladder bile

| PRJDB12063 | ENA

human gut metagenome

Project description:Landscape in the gallbladder mycobiome

| PRJNA1058611 | ENA

Relating human gut metagenome and metaproteome

Project description:Gut microbiome research is rapidly moving towards the functional characterization of the microbiota by means of shotgun meta-omics. Here, we selected a cohort of healthy subjects from an indigenous and monitored Sardinian population to analyze their gut microbiota using both shotgun metagenomics and shotgun metaproteomics. We found a considerable divergence between genetic potential and functional activity of the human healthy gut microbiota, in spite of a quite comparable taxonomic structure revealed by the two approaches. Investigation of inter-individual variability of taxonomic features revealed Bacteroides and Akkermansia as remarkably conserved and variable in abundance within the population, respectively. Firmicutes-driven butyrogenesis (mainly due to Faecalibacterium spp.) was shown to be the functional activity with the higher expression rate and the lower inter-individual variability in the study cohort, highlighting the key importance of the biosynthesis of this microbial by-product for the gut homeostasis. The taxon-specific contribution to functional activities and metabolic tasks was also examined, giving insights into the peculiar role of several gut microbiota members in carbohydrate metabolism (including polysaccharide degradation, glycan transport, glycolysis and short-chain fatty acid production). In conclusion, our results provide useful indications regarding the main functions actively exerted by the gut microbiota members of a healthy human cohort, and support metaproteomics as a valuable approach to investigate the functional role of the gut microbiota in health and disease.

2017-07-19 | PXD005780 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data